Cynara cardunculus var. scolymus (artichoke): 112511236
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Entry
112511236 CDS
T05604
Name
(RefSeq) chaperonin CPN60-like 2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112511236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112511236
03110 Chaperones and folding catalysts [BR:
ccav03110
]
112511236
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112511236
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112511236
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
112511236
Messenger RNA biogenesis [BR:
ccav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
112511236
Chaperones and folding catalysts [BR:
ccav03110
]
Heat shock proteins
HSP60 / Chaperonin
112511236
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
112511236
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112511236
Exosomal proteins of other body fluids (saliva and urine)
112511236
Exosomal proteins of breast cancer cells
112511236
Exosomal proteins of colorectal cancer cells
112511236
Exosomal proteins of bladder cancer cells
112511236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
112511236
NCBI-ProteinID:
XP_024972540
LinkDB
All DBs
Position
LG 4:19690570..19697472
Genome browser
AA seq
576 aa
AA seq
DB search
MYRAAAAFTSSIRSSTSRKLVSGRIIGSRNYVAKDIQFGTRARAAMLLGVNQLAEAVKVT
MGPKGRNVIIDQSRGPPKVTKDGVTVAKSINFEEKAKNVGANLVKQVASATNSVAGDGTT
CATVLTQAIFTEGCKSVAAGVNVMDLRKGISMAVDAIIDDLKRQALMISTPEEITQVATI
SANGEREIGELIARAMEKVGKDGVITVADGNTLDNELEVVEGMKLGRGYISPYFITDTKT
QKCDLEHPLIFIHDKKISDMNSLVRILELAVEKHRPLLIVAEDVESDPLAMLIINKHQAG
VKVCAIKAPGFGDNRRANLEDLAVLTGGEVVSEERGLSLNDVQLDKLGTAKKVIVSLDDT
IILHGGGDKRQIEERCEQLRSTIENSTAVFDKEKAQERLSKLSGGVAVFKVGGASEVEVG
ERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLKGLKTANEDQKRGVEIVENALKAP
ISTIVSNAGGDGAMVLGKLLEQNDLHFGFDAAQGKYVDMVKAGIIDPLKVVRTALVDAAS
VSLLLTTTETTIVDRQGEKNPLANRMPNMDDMGMGF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgggccgctgcagctttcacttcctcgatcaggtcttctacatcaagaaaactg
gtatctggtagaattattggtagtagaaactatgttgcgaaggatatccagtttgggacc
agggctcgggctgccatgttgcttggtgtgaaccagcttgctgaagctgtaaaggttacc
atgggaccgaagggacgtaatgtgattattgaccaaagtcgtgggccccctaaagtcaca
aaggatggtgtcacggtggccaaaagtataaactttgaggagaaggctaaaaacgttggt
gctaatttggtgaagcaggttgcaagtgcaactaattctgtggctggagatggtacaact
tgtgccaccgttctgactcaagcaatattcaccgaaggttgcaagtctgtagctgcaggt
gtaaatgtgatggatttgcgcaagggtatcagtatggctgttgatgccattatagacgac
ctgaaaagacaagcactaatgattagtacaccagaagaaattacgcaggtagccactatc
tctgcaaatggagagcgcgagattggtgaattgatagcaagagctatggagaaagtcgga
aaagatggagtaattacagtggctgatggtaacaccttggataacgaactagaagttgta
gaggggatgaagctaggccggggttatatctctccttattttattaccgacacaaagact
caaaaatgtgatttggagcatccgttaatctttattcatgacaagaaaatttcagacatg
aactcacttgtgagaatcttggagcttgctgtagagaaacatagacctctgctaattgtg
gctgaagatgtggaaagtgatccgttggcaatgctgatcattaacaagcatcaagctgga
gttaaggtgtgtgccattaaagctcctggctttggggataacaggagagccaatcttgaa
gatttagcggtgcttactggaggggaggttgtcagcgaggaacgtggattgagccttaat
gatgttcaactggacaaacttggtacagcgaaaaaggttattgtttctctcgatgatacc
atcattctacatggtggtggcgataagaggcaaattgaagaaagatgtgagcaactaagg
tcaaccattgagaacagcacggccgtgtttgacaaagagaaagcacaagagaggttgtca
aagttatcaggaggggtcgcagttttcaaggtcggaggggctagcgaggtggaagttgga
gaaagaaaagatagggttaccgatgctcttaatgctacaagggcagctgtggaagaggga
atagttccaggtggtggggtcgcccttctatatgctaccaaggttcttaaaggccttaaa
actgcaaacgaggaccagaagagaggagttgaaatagtcgaaaatgcccttaaggcaccg
atatccacaatagtctcaaatgccggtggtgatggtgccatggttcttggcaagttattg
gaacagaatgatcttcattttggatttgatgccgcccaaggcaaatatgtagacatggtg
aaggccggaatcattgatcctttaaaagttgtgagaacagccttagtagatgctgccagt
gtgtcgttgttgttaaccaccacggagacgaccattgtagatcgtcaaggagagaagaac
ccactcgcaaaccggatgccgaacatggatgatatgggaatgggattctaa
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