Cynara cardunculus var. scolymus (artichoke): 112511296
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Entry
112511296 CDS
T05604
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112511296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112511296
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112511296
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112511296
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112511296
U7-dependent histone pre-mRNA processing factors
112511296
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
112511296
NCBI-ProteinID:
XP_024972632
LinkDB
All DBs
Position
LG_4
Genome browser
AA seq
1338 aa
AA seq
DB search
MAVSQREQALSLLAAANNHGDLAVKLSSLKQAKDIFLSADLALLAAELFPYLVELQSSHE
ALVRKTLVEAIEEISLKTMEYSPVLMQVLLTLLSDDDSVVARQSIVAGTHIFCKVLEELA
LQFHRHGLVERWLEDIWSWMIKLKDTVFQIALEARSVGPRLLAIKFLETCVLLFMPDNDS
RGHNTEAATRSAQVFNVSWLAGGHPVLDSVALQSEANRSFLILLDLLRSASVLPGSITIS
VVSSLATIARRRQVQYSSVLSALLDFDASFIAKGAHNASIQYSLRTAFLGFLRCTHPVIM
ESREKLLKVLRAMNAGDAADQVMRQVDKMLRNSERASRDARANKDEQPSSHVLMSGDMPR
KRSIPMDHEHLGSTDLASKRIRYGSNSNTGPVIQSDSGHDHSVNGASGRVPPLDNGLTPV
EQMIAMIGALLAEGERGAESLEILISQIHPDLLADIVVTNMKHLPKSPPPLTRLGSLPVT
QQSGLPTTSSQVAPTTQNPVLIAPVSISSNAISTPLSTTATSISLQADPKRDSRRDPRRL
DPRRVALPVGNPSEHTMEDVTSLTQSGPVELEFDASALFKRQPPRIVVPSIENTSEILMP
KAETELHIPENITKVSQANQSSLKEQVPDEQAIQVGPEVEFNIVSDVAVSPIDYVNKESD
AQKSMDTVMTDEDHTLSLVEADQLSPSTVDTPVLEEASADLPVVPSYVELTEEQQSDIRK
LAIKRIIDSYKQIKGTELMQTRMALLSRLVAQVDADDDVILMIQKHIVSDYQHQKGHELV
MHVLYHLHALRMSDSAEESSVAVVYEKFLLGVARCLLDALPASDKSFSRLFSEAPSLPES
AFKLLDDICCSDNNCGKDIRDGDRVTQGLGSLWSLILGRPHYRQAFLDIALKCAVHPKDD
IRSKAIRLVANKLYVINFISEKIEDFATSKLLSAVNRPISDTEVSVSGADDQRTEGQMGS
QETSISGSQISEPGTSENGTAMGAQSDSRSDSSMSPAQAQQHLSLFFALCTKKASLLQLV
FDRYDHAPKSVKQAIHRHVPILIRALGPSYSDLLCIISDPPQGSENLLTQVLHVLCEGTT
PSADLITTVKRLYETKLKDATILIPILSSFTKNEVLPIFPRLVHLPLDKFQTALAHILQG
SAHMGPALTPAEVLVAIHDISPEKDGVPLKKIMDACSACFAQRTVFTQQVLAKALNQMVD
QTPLPLLFMRTVIQAIDAFPKLVDFVMEILSKLVSKQVWRMPKLWVGFLKCISETRPHSF
HVLLQLPSPQLEGALNKYGSLRVPLAAYANQPNIKASLPRSTLQSLGLASEPHLQQQQQN
PAASFNNPDKSTKVEGTS
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcccagcgagagcaggcactctctctccttgccgctgcaaacaaccacgga
gatttggcggtgaagctttcgtctttgaagcaagccaaagatatttttctgtcagcggat
cttgcgttgcttgccgccgaactattcccgtatttggtcgagcttcagtcttctcatgaa
gcccttgttcgaaaaacccttgtcgaggcgattgaggagatcagtttaaaaacaatggag
tattcaccagtactgatgcaagtgttgttgacgctactaagtgatgatgattctgttgtt
gctcgacaatccattgttgctggcacacatattttttgcaaagtgttagaggagttagcg
ttgcagtttcaccggcatggtctagtggagagatggcttgaagatatctggtcttggatg
atcaagttgaaggacactgtctttcagattgcattggaggctaggtctgttggtccaagg
ctgcttgctataaagtttttggaaacttgtgtattactcttcatgcctgacaatgattct
agagggcataatacagaagcagcaactagaagtgcacaagtgttcaatgtttcatggctg
gctggtggtcatcctgttctggattcggttgcacttcagtcagaagcaaatagatccttc
ttaattttacttgatttgttgaggtcggctagtgttcttccgggctccattacgatttct
gttgttagtagtcttgctaccatagctcggaggaggcaggtccagtatagctctgttctt
tctgcactgctcgattttgatgctagtttcatagcgaaaggagcccacaatgcaagcata
cagtattctctacggactgcttttttgggattcttgaggtgtacacaccctgttatcatg
gagtcgagagagaagttgctcaaggttctgcgggcgatgaatgctggggatgcagctgac
caggtgatgcggcaggttgataaaatgctaagaaatagtgagcgtgcttctcgtgatgct
cgagcaaacaaggatgagcaaccatcaagtcatgtgcttatgtcaggggacatgccaagg
aaacgttcaatccctatggatcatgaacatttaggttccactgatctagcatcaaaaagg
attcgttatggctctaacagtaatacaggtcctgtaattcaaagtgattcaggacatgat
cactcggtaaatggagcgtctggcagggtgccaccgctagataatggcctcacccctgtt
gaacaaatgattgccatgatcggtgctttactcgctgaaggagaaagaggtgctgaatct
cttgaaatcctgatatcccagatacatccagatctgctagctgacattgttgtgacaaat
atgaagcatttgcctaaaagtcctcccccgttaacgagacttggcagtctaccagtaacc
cagcaaagtgggcttccaaccacttcttcccaggttgcaccaactacacagaatcctgtg
ctcatagcaccagtgtctatctcatcaaatgcaattagtacaccattgtctactacagcc
acttccattagtcttcaagcggatcccaaacgtgattcccgaagggatcctcgtcgcctt
gacccaaggcgtgtggcattacctgttgggaacccgtcggagcatactatggaagatgtt
acaagtttgacacaatctggtccagtagagttggagtttgatgcctctgccctgtttaaa
aggcaacctcctcgaattgtggtgccaagtattgagaatacatcagaaattcttatgccc
aaagcagaaactgagttgcatatcccagaaaatataacaaaagtttctcaagccaatcaa
tcatctcttaaagaacaggttccggatgaacaagccatccaagttggtcctgaggtggaa
ttcaatattgtttctgatgtagcagtttctcctattgattatgttaacaaggagtcagat
gcacagaagtcgatggatactgtaatgacagatgaggaccacaccctatcattggtggaa
gcagatcagctttcaccaagtacagtggacacacctgtcttggaggaggcctctgctgat
ttacctgtggttccatcttatgtggaattgacagaagaacagcaaagtgatataaggaaa
ttggcaatcaaaaggattatagactcttataagcaaataaaaggcacagaacttatgcag
acacgcatggcattgctttctcgacttgttgctcaggttgatgctgatgatgatgtaatt
ctaatgatacaaaagcatattgtttcagactaccagcatcagaaggggcatgagcttgta
atgcatgtgctataccacctgcacgctctcaggatgtcagattcagctgaagaatcttca
gtggctgttgtttatgagaagttccttctgggagtggcgaggtgtttgctggatgcttta
ccagcaagtgataagtcctttagccgtctttttagtgaagctccttctttgcctgagtct
gcatttaagcttcttgatgatatatgctgctcagacaataactgtgggaaagacattcgt
gatggtgatcgtgtcactcaaggtcttggttctttgtggagcttaattttaggacgtcct
cactatcgtcaggctttcttggatattgctttgaagtgtgctgttcatcccaaagatgac
atccgctcaaaagcgatccgactggtggcaaacaaactttacgtaattaatttcatctca
gagaaaattgaggattttgctacaagcaaattgctctcagctgttaatagaccaatatca
gatactgaggtttcagtttcgggggccgatgatcaaagaacagaagggcagatgggaagt
caagaaacatcaattagtggctctcagatttcagagccagggacatctgagaatggcact
gcaatgggtgcacaatctgattcccgaagtgattcgtcaatgtcgcctgctcaagctcaa
caacacctttctttgttttttgctttatgtaccaagaaggctagtcttcttcaacttgta
tttgacagatatgatcatgctccgaagtctgttaagcaggctatccatcgccatgtccct
attcttatccgggccttaggtccatcatattccgatttactctgcataatatctgatcca
ccccaaggaagtgaaaacctcctgacacaggtgctgcatgttctgtgtgaagggacgact
ccttcggccgatctaattacaacggtcaagcgtttatatgaaactaaacttaaggatgct
acaatacttattccaatcttgtcttcctttaccaagaatgaggttttgcctattttcccc
agacttgtccatcttccgttggataaatttcagacagcattggctcacatactacagggt
tcagctcatatgggccctgcactaacgccagcagaagtattggttgcaatccacgacatt
agccctgagaaggatggtgttccactgaaaaagataatggatgcttgttcagcttgtttt
gcgcagcgcactgttttcactcaacaagtcctagcaaaagcattgaaccaaatggttgat
caaacacctctacctcttctcttcatgaggacagtaatccaggcgatcgatgctttccct
aagctggttgattttgttatggagatactttccaaactcgtaagtaaacaggtatggcgg
atgccaaaattgtgggttggctttctgaaatgcatctcagaaacgcgaccacattctttt
catgtactgttacaattgccgtcaccacaacttgagggtgctctgaacaaatatggtagc
ctccgagttcctcttgctgcatatgccaaccaaccgaatattaaagcctctttgcctagg
tcaactctacaatcccttggtcttgcaagtgaaccacacttgcagcagcaacaacaaaat
cctgcagcttcttttaacaacccagacaaaagtaccaaagttgaagggacttcataa
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integrated database retrieval system
