Cynara cardunculus var. scolymus (artichoke): 112511302
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Entry
112511302 CDS
T05604
Name
(RefSeq) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112511302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112511302
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
112511302
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
112511302
DNA repair and recombination proteins [BR:
ccav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
112511302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
112511302
NCBI-ProteinID:
XP_024972642
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All DBs
Position
LG 4:18564400..18570825
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AA seq
428 aa
AA seq
DB search
MPELPEVEAARRAIEENCIGKKIKRSVVADDAKVIDGVSPSDFEASLTGKTIVAAHRKGK
NMWIQLDSPPFPSFQFGMAGAIYIKGVTVTKYKRSAVNDTDEWPSKYSKLFIELDNGLEL
SFTDKRRFAKVRLLKNPASVAPISELGPDALLEPLTEDELFKSLSKKKIGIKALILDQSF
ISGVGNWIADEVLYQARIHPLQSAASISKDSCAALHNSLKEVIEKAVEVGADSSQFPSNW
IFHSREKKPGKAFVDGKKIEFINAGGRTSAFVPELQKLSGEQAAKAAVKPQKRSSKKNKD
EDDEPESEDEEIAKNAKPEGGKKTTQSRAKNPNTKRKSIENDDKSSDANDKKSATRKKSK
GSSEVDEHQKGSKGHKKPPAKKKAQESEEDSDDDGEEEGEEEERVQVKGKKEVAKKVQTG
RQTNKRAK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttccagaggtggaagctgctcgaagagcaattgaagaaaactgtatcgga
aagaagattaaacgatcggttgtcgccgatgatgctaaggtcattgacggcgtttcacct
tccgactttgaagcatctctcaccggaaaaacaatcgttgccgctcatcggaaggggaag
aatatgtggattcagctcgattctcctccatttccatctttccaatttggaatggcgggt
gccatatatatcaaaggtgtcacggtcacaaagtataaacggtctgcagttaatgataca
gatgagtggccttccaaatattccaagttatttatagaactagataacggtttggagcta
tcctttactgacaagaggcgatttgcgaaagtccgcttgcttaaaaatccagcttctgtg
gccccaatctctgagcttggtccagatgcattattggagccattgacagaagatgaactc
tttaaatcactaagcaagaagaagattgggattaaggctctcatacttgatcagagtttt
atatcgggtgttggcaattggattgcagatgaagtgctgtatcaggcaagaatccatccc
ctacagagtgctgccagcatatccaaagacagttgtgcagcactgcacaactccctgaaa
gaggttattgaaaaagctgttgaagttggggctgatagtagccagtttcctagtaactgg
attttccattcccgagaaaagaaacctgggaaggcttttgtcgatggaaagaaaatcgag
tttatcaatgctggaggcaggacatctgcattcgtacccgagctgcaaaagctaagtgga
gaacaagcagctaaagcagcggtcaaaccacaaaagaggtctagtaagaagaacaaagac
gaagatgatgaaccagaaagcgaggatgaagaaattgccaagaatgcaaaaccggaagga
gggaagaaaacaactcaaagtagagctaagaatcctaatacaaaaaggaagtcgatcgaa
aatgatgacaaaagctctgatgccaatgataaaaaatctgcaacaagaaagaagtcaaag
ggtagtagtgaagttgatgagcatcagaagggaagtaaaggacacaagaagcctcctgca
aagaagaaggcacaggaaagtgaggaagatagtgatgatgatggtgaagaggaaggggaa
gaagaggagagggttcaggtgaagggaaaaaaggaggttgctaagaaagttcagactggt
aggcagaccaacaagagggcaaaataa
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