Cynara cardunculus var. scolymus (artichoke): 112511310
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Entry
112511310 CDS
T05604
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112511310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112511310
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112511310
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112511310
RNA polymerase I system
112511310
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
112511310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
KOW6_SPT5
Effector_1
Motif
Other DBs
NCBI-GeneID:
112511310
NCBI-ProteinID:
XP_024972658
LinkDB
All DBs
Position
LG 4:complement(1299583..1310503)
Genome browser
AA seq
1054 aa
AA seq
DB search
MPRRRDEYEDDVEDEDEDDAIDDEEDEDYGTSRGGGGGSDRKRRRSDFFDDAAEEDEEEE
EYEDDDEDYGGGGGGGGGGGGSRHRGGKAAKKASGADFFELEADVDTDAEEEEEEDGEDD
FIVNERVDLHDEEDARRMHHRPLLSREDDQEDVEALERIIQERFARNRTEYDDDDATEVE
QQALLPSVRDPKLWMVKCAIGHEREVAVCLMQKCIDRGSELQIRSAIALDHLKNYIYIEA
DKEAHVKEACKGMRNIYTGSKILLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDL
AKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVPKKKTFTPPPRFMNVDEAREMHIRV
ERRRDPMTGDYFENINGMMFKDGFLYKTVSMKSISTQNIQPSFDELEKFRQPNENGDGDI
ASLSTLFANRKKGHFMKGDRVIVIKGDLKNLKGWVEKVEEGTVHIKPNASGLPKTLAVSE
RELCKYFEPGNHVKVVSGAQEGVTGMVLTVQGHLVNLVSDTTKEVLRVFSDNVVESSEVT
SGITKIGDFELHDLVQLDNSNFGVIIRVDSEAFQVLKGVADRAEVELVRLRDIKYKIDKK
ISAQDRFKNTVSVKDVVKVIEGPCKGRQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSC
VLVGGSRANGDRNGNPLQSRVAQFRTPNRLPHSPGRSPRGGPPLPGGRHRGGRGGKDSIV
GTCIKIRLGPFKGYKGRVVDVHGTSIRVELESQMKVVTVDRTHISDNVNTSTTYRDTQRY
GSGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDSWEDGN
PGSWGSSPQYQPGSPRSRAYEAPTPGSGWANTPGGSYSEAGTPRDTTPAYANAPSPYMPS
TPGGQPPMTPSSAYLPGTPGGQPMTPGGGGLDMMSPVVGGDNDGPWFLPDILVNVRRSGD
DAVIGVIREVLLDGACRIALGTSGNGDTITANPNEIEVVVPRKSDKIKIMGGAQRGATGK
LIGVDGTDGIVKVDDTLDVKILDMVILAKLAHSS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgacggcgagacgagtatgaagacgacgtagaggacgaggatgaggatgacgcc
attgacgacgaagaggacgaagattatggcactagccgtggcggcggcggtggaagcgac
cgtaagaggaggagatctgatttttttgacgatgctgcggaggaggatgaagaagaagag
gagtacgaagacgacgacgaagattatggcggcggcggcggtggcggtggtggtggtggt
ggtagccgtcatcgaggtgggaaagcagcaaagaaggcatctggtgccgatttctttgag
ctcgaagctgacgtcgatacagatgctgaagaagaagaggaagaggatggggaagatgac
tttatagtcaatgagagagttgatctacatgatgaagaggatgctagaaggatgcatcat
cgtcctttgctttcacgtgaagatgaccaggaagatgttgaagctcttgagagaataatt
caggagaggtttgctaggaatcgtactgagtatgacgatgatgatgcgacagaggttgaa
cagcaagctctcttgccatctgttcgtgatccgaagttgtggatggtgaaatgtgcgatt
ggtcatgagagagaggtggctgtatgcttgatgcagaagtgcattgatagaggttctgag
ttgcagatcagatcggctattgctcttgaccatttaaagaactatatctacattgaagca
gacaaagaagcccatgtgaaagaggcttgcaagggtatgcgtaatatatatactggcagt
aagattttgctggtccccataaaggaaatgactgatgttctatcagttgagagcaaagca
attgatctttctagggatacttgggtcagaatgaagattggaacatacaaaggggatctt
gcaaaggttgtggatgtggacaatgtgaggcagagagttacggtgaaattaatcccaagg
attgacttacaggctttggcaaacaaattggaaggcagggaagttccaaagaagaagaca
tttacccctccgccacgctttatgaatgttgatgaagctagagaaatgcatatccgtgtt
gaacgtaggcgggatccaatgactggtgattacttcgaaaatataaatggcatgatgttc
aaggatggcttcttatataaaactgtatccatgaaatcaataagcactcagaatatacag
ccaagttttgatgaacttgaaaagtttcggcaacctaacgaaaacggggatggcgacatt
gctagtttgtcgacgctctttgcaaacagaaagaaaggacatttcatgaagggtgataga
gttattgtgatcaagggagacctaaaaaatctgaagggatgggtggagaaagttgaagaa
ggcactgttcatattaaaccgaatgcaagtggccttccaaaaactcttgctgtaagtgaa
agagagctctgcaagtactttgagcctgggaatcatgtgaaagttgtctctggtgcacaa
gaaggtgtgactggaatggttctaacagttcaggggcatctggtaaatcttgtgtcggat
actacaaaggaagttctacgtgtattctctgacaatgttgtggagagttctgaagtaacc
tctggcatcaccaagattggggattttgagctccatgatcttgtccaacttgataattca
aattttggtgtaatcatacgcgtagacagtgaagcctttcaggttctgaagggtgttgca
gatagagcagaagttgaacttgttaggttacgagacattaaatacaagattgataagaaa
atatctgctcaggatcgttttaagaacacggtatcagtgaaagacgtagttaaagttatt
gagggtccatgcaaggggcgacaaggtcctgttgaacatatttatagaggaattctgttt
atatatgatcgtcaccatctggagcatgcagggtttatctgtgccaaatctcaatcatgt
gtattggttggcggctcccgtgcgaatggtgacagaaatggaaatccgttgcaatcaaga
gttgctcagtttaggactcccaatcgacttccacattccccgggtagatctcctagagga
ggcccaccactacctggtgggaggcacagaggtggaagaggagggaaagattccatagtt
ggaacatgcatcaaaattcggctgggccccttcaagggatacaaggggcgggttgttgat
gttcatggcacatcaattcgggttgaactggagtcacaaatgaaggttgttacagttgat
cgtactcatatctctgataatgtgaatacttcgaccacatatcgtgacacacagaggtac
ggttctggaagtgagacacctatgcatccttcacgaaccccactccatccatacatgaca
ccgatgagagatcctggagcaacacctattcatgatggcatgaggacgcctatgcgtgac
cgtgcgtggaatccatacacaccaatgagtcctccaagggattcttgggaagatggaaac
cctggttcttggggaagcagtcctcagtatcagccaggaagtcctcgttcaagagcatat
gaagcaccgactcctggttcaggatgggccaatactcctggtggaagttacagtgaagct
ggcactccaagggatactacccctgcttatgctaatgctccaagtccttacatgccgtcg
acacctggtggacagccaccaatgacaccaagttcagcatatttacctggtactcctggt
ggccaaccaatgactcccggaggtggtgggttggatatgatgtcacctgttgtaggtgga
gataatgacggaccatggtttttgccagatatattggtaaatgtacgcagatcaggtgac
gatgccgtcattggcgtcatccgtgaagtgctcctggatggtgcttgtcgaatagcgctt
ggcacaagcgggaatggagatacgatcactgcaaaccccaacgagatcgaggtggtagta
ccaaggaagtctgacaaaatcaaaataatgggtggcgcccagcgtggggcgaccggtaag
ctgattggtgttgatggtacggatggaatcgttaaggtggacgacacacttgatgttaag
atattagatatggtaattctagccaagttagctcattcgtcataa
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integrated database retrieval system
