Cynara cardunculus var. scolymus (artichoke): 112511338
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Entry
112511338 CDS
T05604
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
112511338
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
112511338
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
112511338
NCBI-ProteinID:
XP_024972696
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Position
LG 4:438587..445937
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AA seq
654 aa
AA seq
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MVSRKGIIATMGVKIHFRKHHVVLDNDIVQLKLTNPGGFVTGVKYNNIDNLLEDHNDESD
RGYWDLVWSSAGNLGTTGTFERIEGTSCEVIVETDDQVEVSFSRTWDSSLEGKHVPLKID
KRFVLLRGSSGFYCYAIYEHLEGWPGFNLDETRIVFRLRKDKFHYMAMSDDRQRYMPLPD
DRLNDRGKPLAYPEAVLLVNPVEPEFKGEVDDKYQYSCETKDLKVHGWISTDPAIGFWQI
TSSNEFRTGGPRKQELTSHVGPINLAMFVSAHYAGNDLVIKFGEGEQWKKVFGPVFMYLN
STTSMGEDPLTLWNDAKNQMLDEVGKWPYDFPASKDFQQAHERGTLSGRLFVHDKFISDE
NTPAIGAYIGLAPPGDPGSWQRENKSYQFWSKANDEGHFSIQNILAGSYNLYAWVPGFIG
DYKNPTTITITPGCEIEIGDIVYDPPRDGPTLWEIGIPDRSAAEFHIPDADPIYTNQFLV
DDPNRFRQYGLWERYTTLYPDSDLVFTIGESDYKKDWFFAHVNRKKDNGDYEKTTWTIKF
KLNDVSKNGTYKLRLALASAQVSDLQVRVNDPNKELPLFSTGIIGGDNAIARHGIHGLYW
LFNIDIPGTNLNSNGENAIYLTQEIIGTPFRGVMYDYIRLEGPPPSQSISHVCI
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgagaaagggtataatcgcaacgatgggagtgaaaatacatttccgaaagcat
catgtggttttggataacgacattgttcaactgaagttaacaaatccgggaggatttgta
actggcgtaaagtacaacaacatcgataatttgcttgaagaccataacgatgaatcagat
agagggtattgggacctcgtttggagttcggccggaaatctgggaacgaccggtaccttt
gaaaggatcgaagggacaagttgtgaggttatagtggaaacggatgatcaagtagaagtc
tcgttttcaagaacatgggattcgtctcttgaaggaaagcacgtcccattgaagatcgac
aaaaggtttgtgttacttcgtggttcttcgggtttctactgctacgcgatttacgaacat
ctggaaggatggcctggtttcaatcttgatgaaaccaggatagtgttcagactcagaaag
gacaagtttcactatatggcgatgtccgatgaccgacaaaggtatatgcctttgcctgat
gatcggttgaatgatagaggtaaacctttggcttatcctgaggcagtacttctcgttaat
ccggtggaacccgaattcaaaggagaggtagacgataaatatcaatattcgtgtgaaaca
aaggatctaaaggtccatggatggatatccacggatccggctatcggattttggcaaatt
acatcaagtaatgagttccgaacaggcggacctaggaagcaagagcttacttctcatgtt
ggcccgataaatctagctatgtttgttagtgctcattatgccggaaacgatttagttatc
aaatttggcgaaggtgagcaatggaagaaagtttttggtccggtttttatgtatctcaat
tcgacgacctccatgggagaagaccctcttacgctctggaatgatgccaagaatcagatg
ctggatgaagttggaaaatggccctacgattttccagcttcgaaagatttccagcaagct
cacgaacgcggcacgctaagcggtagattgtttgtacacgacaagttcattagcgacgaa
aacacacctgccattggtgcgtatatcggactagctccaccaggagaccccggatcatgg
caacgggaaaacaagagctaccagttttggagtaaagcaaacgatgaaggccatttttcg
attcaaaacattttggctggctcatataatctatacgcttgggttcctggattcattggc
gactacaaaaaccctaccaccattaccatcacaccaggctgtgagatcgaaattggtgat
attgtttacgatcccccaagagacggcccaacgttatgggagatcggaatacccgataga
tctgctgcagaattccacattcctgatgctgacccaatctatacaaaccagtttcttgtc
gacgatcctaacaggtttagacagtatggattatgggagagatacacaacgctgtatcct
gatagtgatttggttttcaccatcggtgaaagtgattacaagaaagattggttctttgca
catgtgaacaggaagaaagataatggtgactatgaaaaaacgacatggacgatcaaattc
aagcttaacgacgttagcaagaatggaacttataaactgagattggctctagcatccgca
caagtatctgatctacaggttcgagttaacgatccaaacaaggaattgccattgttttca
actggaataattggaggagataatgcaattgcaaggcacgggatacacgggctgtattgg
ttattcaacatagacataccgggaacgaatctgaactctaatggtgagaacgccatttat
ttaacacaagagatcataggaaccccatttcgtggagtgatgtatgattacattcgttta
gaaggaccgcctccttcgcaatccattagtcatgtatgtatttaa
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