Cynara cardunculus var. scolymus (artichoke): 112511348
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Entry
112511348 CDS
T05604
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112511348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112511348
03009 Ribosome biogenesis [BR:
ccav03009
]
112511348
04131 Membrane trafficking [BR:
ccav04131
]
112511348
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112511348
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112511348
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112511348
Membrane trafficking [BR:
ccav04131
]
SNARE
SNARE associated proteins
Others
112511348
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112511348
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112511348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_5
AAA_2
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
AAA_7
Viral_helicase1
NB-ARC
AAA_24
NACHT
TsaE
AAA_lid_PRS2_C
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
112511348
NCBI-ProteinID:
XP_024972714
LinkDB
All DBs
Position
LG 1:complement(10483293..10490141)
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AA seq
811 aa
AA seq
DB search
MSNQPESSSSDPKGPPPPKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPNTMEKLQ
LFRGDTILIKGKKRRDTVCIALADETCDEPKIRMNKVIRTNLRIRLGDVVSVHQCPDVKY
GKRIHVLPLDDTIEGVTGDLFDAYLKPYFLEAYRPVRKGDHFLVRGGMRSVEFKVIETDP
GEYCVVAPDTEIFCEGEPIKRDDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK
SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFE
EAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN
SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKETHGYVGADL
AALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEV
PNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI
ANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSG
DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDED
SRYQIFKAAMRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER
KRSENPDSMDEDEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEF
RFSEATSGGGAAASDPFAASAGGADDDDLYS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccagccggaatcttcttcttccgacccgaaaggtccgccgccgccgaaaaag
gacttttcaactgctatcttggagcgcaagaagtctccgaatcggcttgttgttgacgaa
gctgtcaatgacgataactccgtcgtcgctatgcaccctaatacgatggaaaaattgcag
cttttccgtggggataccatactgattaagggcaagaaaaggagagatacagtctgtatc
gcacttgctgatgaaacatgtgatgagccgaagattagaatgaacaaggttattaggaca
aacttgaggattcggcttggtgatgttgtgtctgtgcaccagtgcccagatgtcaagtat
ggaaagcgtattcatgttcttcctctggatgacaccatcgaaggtgttacgggggacttg
tttgatgcatatttgaaaccctacttcttggaggcatatagacctgtaaggaaaggagat
catttccttgttcgaggagggatgagaagtgtggaattcaaggtaattgaaactgatcct
ggggaatactgtgttgttgctccagacactgaaatcttttgtgagggcgaacccattaag
agggatgatgaggataggctggatgaggttggctatgatgatgtaggtggtgtcaggaaa
caaatggcgcagattcgtgaattggtggaattaccattaaggcacccacaacttttcaag
tctattggagtaaagccccctaaaggaattttgctctatggacctcctggttcaggaaag
acactgatagccagggctgttgctaatgaaacaggagctttctttttttgcatcaatgga
ccagaaattatgtcaaaattggctggagagagtgaaagcaatctcaggaaggcatttgag
gaggctgagaagaatgccccatcaattattttcattgatgagatagattcaatagctcct
aagcgagagaagaccaatggtgaagttgaaaggaggattgtatcacagctcttgacactt
atggacggattgaaatcgcgtgcccatgttattgtaattggggctacaaatcgcccaaac
agcatcgatcctgctctcagaaggtttggtaggttcgatagggaaattgacattggtgtg
ccagatgaagttggacgtcttgaggttcttcgtatccacacaaagaacatgaagctttct
gatgatgttgatttggaaaggatagctaaagaaacacatggttatgttggtgctgatctt
gctgctctttgcactgaagctgcgcttcaatgcattagagaaaaaatggatgttattgac
ttggaagatgaatctattgatgctgagatactaaattccatggcagtctccaatgaacat
ttccagacggctcttgggacaagcaatccatctgctttgcgtgagacggttgttgaggtt
ccgaattgtagctgggatgatattggaggccttgagaatgttaagcgcgagcttcaagag
actgttcaatatcccgtggagcatccagagaaatttgagaaatttggcatgtcaccgtcc
aaaggagttcttttctatggccctcctggatgtgggaagacacttttggccaaggctatc
gcaaatgaatgtcaagcaaacttcattagtattaaaggacctgaattactaacaatgtgg
tttggggaaagtgaagccaatgttcgtgaaatttttgacaaagccagaggatctgcaccg
tgtgttttattctttgatgaactcgactccattgcaactcagaggggaagcagttctgga
gatgcaggcggggctgctgatcgagttctgaatcagctattgactgaaatggatggaatg
tctgcgaaaaagactgttttcataattggagcgaccaatagacctgatatcattgatcct
gcattactacgtccaggacgtcttgatcaactgatctatatcccgttaccagatgaggat
tcacgttaccagatttttaaggctgcaatgaggaaatcccctgtttctaaggatgttgat
ttgagagctcttgccaagtatactcaaggctttagtggggctgatattacagaaatatgc
caacgggcctgcaagtatgcaataagagagaacatcgagaaagacatagagagggaaaga
aagagaagtgagaatcctgactcgatggatgaggacgaggatgaagtggcggaaatcaag
gctgctcattttgaggaatcgatgaagtatgcacgtagaagtgtgagtgatgcagacatt
cgcaaataccaggcatttgctcagacgttgcaacagtctcgagggtttggatctgaattc
cgtttctcggaagcaacatccggtgggggtgctgctgcatctgatccctttgctgcttct
gccggaggagctgatgatgacgacttatacagttag
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