Cynara cardunculus var. scolymus (artichoke): 112511457
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Entry
112511457 CDS
T05604
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112511457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112511457
03041 Spliceosome [BR:
ccav03041
]
112511457
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112511457
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112511457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
112511457
NCBI-ProteinID:
XP_024972848
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All DBs
Position
LG 4:complement(14844468..14852434)
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AA seq
812 aa
AA seq
DB search
MDLNMAEPGEILPDRKIDTSAYDLLHKTRASVEDIVAQMLSVKKEGGGGDSTKSQLPELV
TQMLINFVNLRKANRSILLEEDLVKAETEHAKAPVDFTTLQLHNLMYEKNHYVKAIKACK
DFKSKYPDIELVPEEDFFRDAPEQIKNSVQSNDSAHDLMLKRLNFELFQRKELSKLHEKM
EEQKKILQDTIANRKKFLSSLPSHLKSLKKASLPVQNQLGILHTKKLKQHQSAELLPPPL
YVIYSQLLAHKEAFGESIDLEIVGSMKDAHVFARQQANKDNGITSPNIENSKLEDDVPDE
EDDGQRRRKRPKKIQVKESLDPARIYQAHPLKLILQVHDDEASDQKSTKLIVLKFEYLLK
LNVVCVGIEGSNEGPESNILCNLFPNDAGLELPHQSAKLWSGDGPIFDERRSSRPYKWTQ
HLAGIDFLPEVSPLLTTGGDSTNGETTKQTAIISGLSLYRQQNRVQTVVQRIRARKKAQM
ALAEQIDSLTKLKWPALTCRTVPWFSHVRLCSLQSWTVKPPPKPAASVGEQIQVSQEVDM
VVEPDTLKAEIENIREDGELPSLNPATTIVNEITTTPVKGSGIEHSKRLALITKSMASPM
SKGKSPSFRKHDEDLDLMLLSDSEVDEPPQTEPETDEISGTGNLKVIDNSWMSCGVREYR
LLLTRKVYSGDGLMKLEAKINISMEYPLRPPLFTLNLFRATTAGTGSETEANEWFNELRA
MEAEVNIHVAKLISWEEENYILGHQVCCLAMLFDFYVNDGASSTEKGKSTFVVDVGLCKP
VNGGLVTRTYRGRDHRKMISWKDNGCTPGYPS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaatatggcggaacccggcgaaattttaccggatcggaagatagatacgtct
gcgtacgatttgcttcacaagactagggcctccgtggaggacatagttgcacagatgctt
tcggtgaagaaagaaggaggaggcggcgatagtaccaaatcacaactgcctgagctcgtc
actcagatgctcatcaactttgtgaaccttcggaaggcaaatcgttccatattgcttgaa
gaagaccttgtaaaagcagagactgaacatgcaaaagcacctgtagacttcacaacactg
caactccacaaccttatgtatgagaaaaatcattatgtgaaagcaataaaggcttgcaaa
gactttaagtctaagtatccagatattgaacttgttccggaggaagattttttcagagat
gcaccagaacaaattaagaactctgtacagtcaaatgacagtgcccacgatctgatgctt
aagaggctcaattttgagctgtttcagcgcaaagaattgtccaagcttcatgaaaaaatg
gaagagcaaaagaagatcctccaggacactattgctaacaggaagaagtttttatcaagt
ctcccatcacaccttaaatctctaaagaaggcatcccttccagtacaaaaccaactggga
attcttcacacgaagaaactgaagcagcatcagtcagcagagttgcttccacctcctctc
tatgtgatatactcacaattgttagctcataaagaagcatttggtgagagtattgatctc
gagattgtgggaagcatgaaggatgctcatgtatttgcccggcagcaagccaataaggac
aatggcataacttctcctaatatagagaattctaagttagaagatgacgtgcctgatgag
gaagatgatggccaaaggaggagaaagcgtccaaagaaaatccaagttaaagagagtctt
gatccagcaaggatatatcaagctcacccacttaaactcatcctccaagtacatgatgat
gaggcgtctgatcaaaaatctacaaagcttattgtactgaaatttgagtatttgctgaag
ttgaatgttgtttgtgttggtattgagggatcgaatgagggtccagagagtaatatctta
tgcaacctcttcccaaatgacgcagggcttgagcttcctcatcagtcagctaagctttgg
agtggcgatggtcctatatttgatgaaagaagatcttcacgtccatataaatggacacaa
catttagccgggattgattttttaccagaggtctcacccctccttactacaggcggggat
tccacaaacggtgaaacaactaaacaaactgctatcatttctgggttatcgttatatcgc
cagcagaacagggtgcagaccgttgtgcaaaggattcgggctaggaaaaaggctcagatg
gcccttgcggagcagattgactcgctaacaaagcttaaatggcctgctttgacttgtaga
accgtaccgtggttttcacatgtccgtctctgcagtttgcagagctggacagttaagcca
ccacccaagcctgcagcgtctgttggagaacaaattcaagtttcacaggaagttgacatg
gttgttgaacccgatactttgaaggcagagatagagaacattagggaggatggggagctt
ccatctctaaatccagccacgaccattgtgaatgaaattaccactacccccgtgaaggga
tcaggcatcgaacactccaaacgtcttgctttaatcacgaaatctatggcttctccaatg
agcaaggggaaatcaccaagttttagaaagcacgatgaagatttggatttgatgctgctt
tctgacagtgaggtggatgagcctccacaaactgagccagagactgatgagatatctggg
actgggaacttaaaggtaatcgataactcatggatgtcatgtggggtccgggaataccgt
cttctcctaacaagaaaagtctacagcggtgatgggctcatgaaattagaagccaagatc
aacatcagcatggagtatcccctcaggccgccactttttaccctgaatctttttagagcc
actactgcaggaactggatcggagactgaggctaacgagtggtttaatgaattacgagcc
atggaagctgaggtaaacattcatgtagcaaaattgatatcttgggaggaagaaaattat
atattgggccatcaggtatgttgcctcgcaatgctgttcgacttttatgtgaatgatgga
gcttcatctaccgagaaaggaaagagtacttttgtggttgatgttggtttgtgcaaaccc
gttaatggcggacttgtcacaagaacttacagaggtcgggatcatcggaaaatgatctcc
tggaaggacaatggttgcactcctgggtatcctagctag
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