Cynara cardunculus var. scolymus (artichoke): 112511481
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Entry
112511481 CDS
T05604
Name
(RefSeq) cryptochrome-1-like
KO
K12118
cryptochrome 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112511481
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Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
112511481
NCBI-ProteinID:
XP_024972884
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Position
LG 4:11310820..11316745
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AA seq
667 aa
AA seq
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MAGGCSIVWFRRDLRVEDNPALAAGVRAGQVIAVYIWAPEEEGHYYPGRVSRWWLKQSLA
LLDSSLKNLGTSLVTKRSTDSVSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRMKEVLTS
NGIAVRSFNADLLYEPWEVLDDEGRPFNTFTEFWDRCLSMPYDPESPQLPPKKIISGDLS
KCRSETLVFEDESEKGSNALLARAWSPGWSNADKALAAFISGPLLEYAKNRRKADSATTS
FLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNTAGEESVNLFLKSIGLREYSRYMSFNHP
YSHERPLLGHLKFFPWIVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF
FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDP
NGEYVRRWLPELARLPTEWIHHPWDAPEYVLQAAGIELGSNYPLPIVKMDAAKARLQEAL
AQMWQHEAASRAILENGIEEGRGDSSDDAPIAFPQDMEMEMDENTLRTNPTTTTIRHYED
QMVPSMTTSLLRGGGEESSSDLANLAEDSRAEVPTNQGVDNAQTARTDDMQPQMDITRAL
RNGDDLAVESSNSSGSSSRERDGGVVPVWSPSSSSFTENFVGEDSSYLQRHPQSHQLINW
RRLSQTG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagggtgtagtatagtgtggtttaggagagatctgagggtggaagataaccct
gctttggctgctggtgtgagagcaggtcaagtgattgcagtttatatttgggcaccagaa
gaagaaggtcattattaccctggaagggtgtcaagatggtggttaaaacagagtctagct
ttgttggattcatctttgaaaaaccttggaacttctcttgtaaccaagagatctactgat
agtgtttcttcacttcttgaggttatcaaatcaactggtgctactcagctttttttcaat
cacttatatgatcctttgtctctcgttagggatcaccgaatgaaggaggttttaaccagt
aatggcatagcagtgcgttccttcaatgcagatttgctatacgaaccatgggaagttctt
gatgatgaaggccgcccgttcaatacatttacagaattttgggaccggtgtcttagcatg
ccatatgatcctgagtctccacaactcccaccgaagaagataatctcaggcgacttatca
aaatgccgttcagaaacactggtttttgaggacgaatcggagaaaggaagcaacgccctt
cttgctcgggcatggtcacctggttggagcaatgccgacaaggcactagcggcattcatt
agcgggccattactagaatacgccaagaaccgtagaaaagccgatagcgcaacaacctcc
ttcctatctccacaccttcattttggagaagttagcgtacgaaaagtcttccatttggta
cgaatcaaacaagtcctctgggccaacgaaggaaacacagctggtgaagagagcgtaaat
ctgttcctaaaatccattggtcttcgggaatattcaaggtacatgagttttaaccatccg
tatagtcatgaaaggcctcttttggggcatttgaagttcttcccatggatagtagacgag
ggttattttaaggcttggagacaaggtcgaacaggctatccgttggtcgatgccggcatg
agagaattgtgggccactgggtggctgcacgataggataagagtcgtggtatcgagtttc
tttgtgaaggttttacagttaccatggagatggggcatgaaatatttctgggatacgctg
ttggatgccgatcttgagagtgatgctttaggctggcaatatatctcgggtactttgcct
gatggccgtgagtttgatcgtatcgataatcctcagtttgaaggctataaattcgaccca
aatggagaatacgttaggaggtggcttcctgagcttgctagactaccaaccgaatggatc
caccacccatgggatgcaccagaatacgtacttcaagctgctggtatcgagctcggttcc
aactaccctctcccaatcgtcaaaatggatgcggcaaaagcacgattacaagaagcgctt
gcgcaaatgtggcagcacgaagcggcttctagagccattctcgaaaatggaatagaagaa
gggcgtggagactcatctgacgatgctccaatagctttccctcaagatatggagatggaa
atggacgaaaataccctcaggaccaatcctacgaccaccacgatccgccattacgaagat
caaatggttcctagtatgacaacatcgttgttaaggggaggcggagaagaatcgtcttcg
gatcttgcaaatctagcggaagatagcagggctgaggttccaactaatcagggtgtagat
aatgctcaaacggcaagaacggatgatatgcagccacagatggatatcacacgagcgttg
agaaatggcgatgatttggcggttgaatcctctaacagttctggttcaagttcgagggaa
agagacgggggtgtcgtgccggtgtggtcaccttcatcttctagtttcacagagaatttt
gtcggtgaagatagttcttatttgcaaaggcatccgcaatcacaccaattaatcaactgg
aggcggctttcccaaaccgggtga
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