KEGG   Cynara cardunculus var. scolymus (artichoke): 112511535
Entry
112511535         CDS       T05604                                 
Name
(RefSeq) DNA repair protein UVH3 isoform X1
  KO
K10846  DNA excision repair protein ERCC-5
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    112511535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112511535
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     112511535
SSDB
Motif
Pfam: XPG_N XPG_I XPG_I_2 UBM EBNA2_Core API5 Flagellin_C
Other DBs
NCBI-GeneID: 112511535
NCBI-ProteinID: XP_024972968
LinkDB
Position
LG_1
AA seq 1452 aa
MGVHGLWDLLSPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDERGDMVRNAHILGFFR
RICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLSHLKATRLK
ELANDLENQRKNNGDKGKKVITDHADLSGTALNTNSSDTKAFDQEVLDAMLAASIEAEEG
EGFIGDASTSGAGFLAEDEDGDDDEEMILPALQGKVDPAVLAALPPSMQLDLLVQMRERL
MAENRQKYQKVKKAPARFSELQIEAYLKTVAFRREIDEVQKAAGGRGIGGVKTSRIASEA
NREFIFSSSFTGNRQSLASSGVEGNSNVPSQIATRHPSTGSVNDVVSTNKSNSTIESIMN
KPRKAFNEDVETYRDERGSIRVSKVRAMGIRMTRDLQRNLDLMKEIEQDRIDPCIKSNDR
ISHCKETAFPSTVPESSKLPGTSLHDRSVCSNETNQDSIPVSGTSIEVSFEDDNEQQFVD
SDDDVFACIVAGDPLVVTSADNTSSAKQPAMTLSDCEWEEGMLGDTKGKRLLAGHSTSDE
SEVEWEEGPSDKPESGAACEIECRETVSKGDLLEEADLQEAIRLSMEDMRCQKDIDASSA
PEEFKGNKNMDTECAVFVSEYVETDRAAPRLPSESVPPNKLSIATVAGVDDGVDSVDETK
IKKANSSPTTQLEVTTSDDPSLMEVRMETSYQSDLKYHPELSIREACDDRNSQGETEHVD
NSQGETEHVDVINPTKEDETESSIELHEDNCGGNSKTPISSNIFSCTTNHISKPDVGMPD
APLADAQQSELKALVSDHIPEITKPKETAVNESKHDFDVALKVTEERDNYASYEQREDDV
NKFVLTDMSEEQVEIAKASLEEEMTNLTKERTDLGDEQKRLERNAESVSGEMFAECQELL
QMFGLPYIIAPMEAEAQCAYMELENLVDGVITDDSDVLLFGARSVYKNIFDDRKYVETYF
MKDIETELGLTRDKLIRMAMLLGSDYTEGISGIGIVNATEVLNAFPEEDGLQKFREWIES
PDPTILGKASSTRKRGSNSSAEEASTVNQGVTNSDDDIHRMKQIFMDKHRNVSKNWHIPS
TFPSDAVISAYASPQVDKSTEPFSWGKPDLFVLRKLCWEKFGWGTQKADELLQPVLKEYN
KHETQLRLEAFYTFNERFAKIRSKRISKAVKGIAGSKTSESMDYDELDASSGKERKEVKH
EEGNVDVTKEQLTAPTEKSELSTQEGERKNTKERSSVGGRGRGRGRGRGRGRGRGRGQSV
GKRRRKTKYNLELSGTSSDDGNNSDYVQEVHAEHSEGQHEVRKSKRVRKSVISSTNNEDS
EMDEAREVAGNGEPSREEERLVSHDDKFMLSGSGIRSDKHWCQEEEGGPVIELSEEYLKM
GGGFCLDEEEGDKEPTGMLNEATNEGETEASSISPNVEADIVVGVSNEEDDQTRPVTHLS
GIPNLRRKRKKG
NT seq 4359 nt   +upstreamnt  +downstreamnt
atgggtgttcacggcctttgggacctgttatctcccgtcggccgacgtgtctcagttgaa
accctcgccggcaaaagactcgcgattgatgccagcatatggatgatacagttcatgaaa
gcgatgcgagatgaacggggagatatggtgaggaatgcgcacatattagggttttttcga
cgaatttgcaagctactgtttctgcggacaaaaccagtgtttgtttttgacggtggcaca
cctgccctaaagcgaagaaccgtaattgcacgtcgtcgtcagcgtgagaatgctcaagcc
aagatccggaaaactgctgaaaagttacttcttagtcatctcaaggcaacgaggctgaaa
gaactggcaaatgatttggagaatcagagaaagaacaacggtgataagggaaaaaaggtg
atcacagaccacgctgatctttctgggactgctttaaatacaaattcatcggatacaaaa
gctttcgatcaagaagttttggatgccatgttggcagcatccattgaggcagaggaaggc
gaaggttttataggtgatgcatcaacatctggtgctgggtttcttgcagaagatgaagat
ggagatgatgatgaagagatgatacttccagcactacaaggaaaggttgatcctgccgtt
ctagctgctttaccaccatctatgcaacttgatcttcttgtgcaaatgagagagaggttg
atggcagagaaccgacaaaaatatcaaaaagtcaagaaggcccctgcaagattttctgaa
ttgcaaatagaggcttaccttaaaacagttgccttccgtagggagatagatgaagtgcag
aaagcagctggtggaaggggaattggtggagttaagacttcacgtatagcatccgaagcg
aatcgggaatttattttttcatcttcttttactggcaataggcaatcccttgcatcttct
ggagtagagggaaacagcaacgtgccaagccagatagcaacaaggcatccctctactggt
tctgttaatgatgttgtgtcaaccaataagtccaacagcacaattgagtctatcatgaat
aagcccagaaaggcatttaatgaagatgttgagacgtacagagatgagaggggaagtata
agagtcagcaaggtgagagctatgggaattcgtatgactcgtgatttacaaaggaatctg
gatctaatgaaagagattgaacaggataggattgacccatgtataaaatctaatgataga
attagccattgtaaagaaacagcattcccaagcacagttccagaaagttccaagcttcct
ggaacttctcttcatgatcgatcagtttgctccaatgaaactaatcaggattctatccca
gttagcggaacttcaatagaggtgtccttcgaggatgacaatgagcaacagtttgtagac
agcgatgatgatgtatttgcttgtatagttgctggagatcccttagtagtcacttcagct
gataatacttcatctgcgaaacaacccgctatgactctttcagattgtgaatgggaagag
ggaatgcttggagataccaaaggaaaaagacttcttgctggtcatagtactagtgatgaa
agtgaagtggaatgggaggaaggaccttctgataaacctgagtcaggtgctgcatgtgaa
attgaatgcagggaaacggtctcgaaaggggatttattggaagaagcagatcttcaggaa
gcaattagactgagtatggaagatatgaggtgccagaaagatattgatgcatcatctgca
cctgaagagtttaaaggtaacaaaaatatggatactgaatgtgcagtttttgtgtctgaa
tatgtagaaacggacagagctgctccaagattaccatcagagagtgttccgccaaacaaa
ctgtccattgcaactgtggctggagttgacgatggggtggatagcgtggatgaaaccaag
ataaagaaggctaatagttctcctactacccagttggaggtgactacttcagatgatcca
agtttaatggaagtgcggatggaaacatcctaccaaagcgatctgaaataccatcctgaa
ctttcaattagagaagcatgtgatgatcgaaattctcagggagaaactgaacatgtagat
aattctcagggagaaactgaacatgtagatgtcataaatccaaccaaagaagatgaaact
gaatcgagtatcgagttgcacgaggataattgtggagggaattccaagacgcctatcagt
tcaaatattttttcgtgcacaacaaatcatatttctaaacctgatgttggcatgcctgat
gcccctcttgctgatgctcaacaaagtgagctcaaagctttggtcagtgaccatattcca
gagataacaaaacctaaagaaaccgctgttaacgaatcaaaacatgactttgatgttgcg
ctgaaggttactgaggaaagggacaattatgcttcctatgagcaacgggaagatgatgtc
aacaaatttgttttgactgacatgagtgaggaacaggttgaaatcgcgaaggctagtttg
gaggaggaaatgacaaatttaaccaaggagcgcacagatctgggtgatgaacaaaaaagg
cttgagcgcaatgcagagtctgtaagcggtgagatgtttgcagaatgccaggaacttctt
caaatgtttggcttgccatatatcatcgcaccaatggaagctgaagctcaatgtgcatac
atggaactcgagaaccttgtcgatggtgttattactgatgactctgatgtgttgttgttt
ggggcaagaagtgtttacaaaaacatatttgatgacaggaaatatgtagagacgtacttt
atgaaggacattgaaactgagcttggcttaacgcgagataagttgattcgtatggcaatg
ctcctggggagtgattacacggaaggtatcagtggtataggtattgtcaatgctacagaa
gtcctgaatgcatttcccgaggaagatggcctccaaaaatttcgtgagtggatagaatca
ccagatccaactatccttgggaaggcttcgagtacgaggaagagaggatcgaatagcagt
gctgaagaagcttctacagtcaatcaaggtgttaccaattctgatgatgacatccacagg
atgaagcaaattttcatggataagcatagaaacgtgagcaaaaactggcatattccttcc
acttttccaagtgatgcagtgatttctgcatatgcttctccacaagtagacaagtcgaca
gagcctttttcatggggaaagccagatctttttgttctccgcaaattgtgttgggaaaag
tttggatggggtacccagaaggctgatgagttgttacaacctgttttaaaggagtacaac
aaacatgagactcaattgcgattggaagcattttacactttcaatgagagatttgcgaaa
atccgtagcaagagaataagcaaggctgtgaaaggaatagcagggagcaaaacgtctgag
tcaatggattatgatgagcttgatgcatccagtggaaaggagagaaaagaagtgaagcat
gaagaaggtaatgttgatgtaacaaaagagcagcttaccgctcctacagagaaatcggaa
ttgtcaactcaagagggagagaggaaaaacaccaaggaaagatcaagtgttggaggcaga
ggcagaggcagaggcagaggcagaggaagaggaagaggaagaggaagaggtcaatcagtt
ggaaaacggagaaggaaaacaaagtataatctggaactttctgggacgagttctgatgat
ggaaacaacagcgactatgtgcaggaagtgcatgctgaacattcagaagggcagcatgaa
gtacgaaagtcgaagcgtgtcaggaaatcggtgatatcctccacaaacaatgaagactct
gaaatggatgaagccagagaggttgctggcaatggagagccatcgagggaggaagagagg
ttggtcagtcatgacgacaaattcatgttgtcaggaagcggtatccgttctgataaacat
tggtgtcaagaggaagaaggcggcccagtgatcgaattatctgaagagtacctcaaaatg
gggggtgggttttgcttggatgaggaggagggtgacaaggagccgaccggaatgttgaat
gaagcaaccaatgaaggggagacagaagcatcatcaattagcccaaatgttgaggctgat
atagtggtgggtgtgtccaatgaagaagatgatcagacgagacctgtaacgcacttgtct
ggtataccgaacttgagaagaaagcgaaagaagggatga

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