Cynara cardunculus var. scolymus (artichoke): 112511582
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Entry
112511582 CDS
T05604
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030
DNA replication
ccav03420
Nucleotide excision repair
ccav03430
Mismatch repair
ccav03440
Homologous recombination
ccav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112511582
03420 Nucleotide excision repair
112511582
03430 Mismatch repair
112511582
03440 Homologous recombination
112511582
03460 Fanconi anemia pathway
112511582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccav03000
]
112511582
03032 DNA replication proteins [BR:
ccav03032
]
112511582
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112511582
Transcription factors [BR:
ccav03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112511582
DNA replication proteins [BR:
ccav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112511582
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112511582
MMR (mismatch excision repair)
112511582
DSBR (double strand breaks repair)
HR (homologous recombination)
112511582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
112511582
NCBI-ProteinID:
XP_024973030
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All DBs
Position
LG 4:12402002..12406033
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AA seq
601 aa
AA seq
DB search
MAKSVTPEAISVILSNPSPDSSAVHPEIVVQVLHIKSAGNRYTFTVSDGKMKLKAILQSS
LSSEVINGNIQNLGLIRVIDYTLNDIPNKNEKYLIVTKCEAVSPPLEAEYKVEVKSEGAG
ILLKPKQEVITKSAAQIINEQNGNMAPSARMAMTRRVHPLASLNPYQGNWTIKVRLTSKG
NMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFDVFQTGKVYYISKGTLKVAN
KQFKTVQNDYEMTLNENSQVEEAINEAAFIPETKFNFVPIDELGPYVGQRELVDVIGVVQ
NVSPTMSIRRKIDNEAIPKRDIIIADATKKTVVVSLWNVLATDIGQKLLDMADESPIVAI
KSLRVSDFQGVSLSTLGKSIVEINPDIPESNKLRSWYCSEGKETSMESVGAGLSPSLKSG
GRSMYSDRVTLDHITSNPSLGSDKPMFYSTRACMSLIKTDQTMSYRACKTCNKKVTEAIG
SGYWCEGCQKNEEDCSLRYILAAKFSDASGGAWFSVFNNEAEKIIGCSADELDKMKSQGD
GTDFQLQLKKATWVPHLFRVSVAPREYNNEKRQRITVRAVAPVDFAAESKFLLEEISSMK
L
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcggtgaccccagaagcgatatcggtgatactgtccaatccttctcctgat
tcgtcggccgttcatccagaaatcgttgtccaagtactccatatcaagtctgctggcaac
agatacacgtttactgtcagtgatggcaagatgaagttgaaggcaattttgcagtctagt
ttatcatctgaagtgatcaatggaaatattcaaaatttgggccttattcgtgtcattgat
tacactctcaacgacattccaaacaagaatgagaagtacttgattgtgaccaaatgtgaa
gctgtgtctcctcctttagaggcagaatataaggtagaggtgaagagtgaaggagctggc
attctgttgaagccaaagcaagaagttatcactaaatcagcagctcaaattatcaatgag
cagaatgggaatatggcaccctctgcccgaatggcaatgacaaggagagttcatccactg
gcttctttaaacccttaccaaggaaattggacgattaaggttcgattgacgtccaaagga
aacatgcgcacttacaagaatgcaaggggggagggctgtgttttcaatgtggagttaact
gatgaagatggtactcaaatccaagcaaccatgtttaatgaggctgcaaggaagttcttt
gatgtgttccaaacgggaaaagtctattacatatccaaaggaactttgaaagtggctaac
aagcaattcaagactgtacagaatgattatgaaatgactctaaatgaaaattctcaagta
gaagaggcaatcaatgaagcagcttttatccctgaaaccaagttcaattttgtcccaatt
gatgagttgggaccatatgttggtcagagggagcttgtggatgttattggagtggtgcaa
aatgtatctccaacaatgagcattcgaaggaaaattgacaatgaggccattccaaagcgt
gacataatcatcgcagatgcaacgaagaagactgtagttgtgtctttgtggaatgttctt
gccaccgatatcggccaaaaactattagacatggctgatgaatcaccaatagttgcaatc
aaatctttaagggtatcagattttcaaggggtatctctgtcaacattgggaaaaagcatt
gtagagataaatcctgatatcccagaatctaacaagttgagatcatggtactgttctgaa
ggcaaagaaacctccatggaatctgttggtgctggcttgagcccatcgcttaaaagcggt
ggtaggtccatgtattctgaccgtgtgacacttgaccatataaccagcaacccatctttg
ggttcagataagccgatgttttacagcacacgagcttgtatgagcttgatcaaaactgat
cagaccatgtcataccgagcatgcaagacttgtaacaagaaagttactgaagctattgga
tctggttactggtgtgaaggatgtcagaagaatgaagaagactgcagtttgaggtatata
ttggctgcaaagttttctgatgcaagtggtggagcttggttttcggttttcaataatgaa
gctgaaaaaataatcggatgctcagctgatgagcttgataagatgaagtcacagggtgat
ggaactgatttccagttacaacttaaaaaggcaacatgggtcccacatcttttccgagtt
agcgttgcaccaagagagtacaacaatgagaagcgacaaaggatcactgttagggccgtt
gctccggttgattttgcagctgagtctaagttcttgctggaagagatatcttcgatgaaa
ctttga
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