Cynara cardunculus var. scolymus (artichoke): 112511627
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Entry
112511627 CDS
T05604
Name
(RefSeq) WD repeat-containing protein 43 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112511627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112511627
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112511627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp12
WD40_WDHD1_1st
Beta-prop_ACSF4
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_EML_2
WDR55
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_EMC1_N
Beta-prop_EML
Beta-prop_TEP1_2nd
PEP5_VPS11_N
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
PQQ_2
Beta-prop_VPS8
DUF3864
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
112511627
NCBI-ProteinID:
XP_024973091
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Position
LG_4
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AA seq
615 aa
AA seq
DB search
MAKERVKPLMSSFTSKAEVFAALLPNGVLKVWNTSDGNLLAEWKQPDGESDAHFSCIACS
FVGKKRRKEKGTCLVALGTDDGEVFTINATAAEMKWKSSGHHHGRIAALSFANKGRKLCV
ISTDGATCEMNSESGELLKETKISKKYISSAVYFSDDKILAAANTKIRVLSLEDGKELLK
FSTDEGPVRHISMLEDTNLIITSGFDDKNLQVWKNEANTEIVTSGPILSMRHPSLAIECK
SGCNGEDLAVLSVSENGVAYIWNMKNSSEGNIVPAKIKVEAGESETDPNVSGKKKRHTSI
LAARLSSVDSDDRVTGVIVYGSINSPQFTSVDVTSPGEDIVIDARADVRENGVNDGKDKK
DVRGKKRTASDADSGNAVVKSDNDHGDPMDGVQIDNDIDEPTMGEKLASLNITKNEGESE
EKAESSPAKPPSADSVHVLLKQALHADDRSLLLDCLFRQDEKVIRNSVYLLNPSEVFKLL
ESLISMIQSRGAVIACALPWLKSLLLQHSSSIMSQESSLIALNSLYQLIESRISTFNPAH
QLSSCLDLLYTKTLDDGVDEGEGPLEPIIFEDVSDEDEDGSEEDGDNMETDEEDNEELEA
VSNVSDLEGSDGMAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagagagagttaaacctctgatgtcatccttcacttcaaaagctgaagtattt
gctgctctactccccaatggagtcttgaaagtttggaacacgagtgatggaaatctatta
gccgaatggaagcaacccgatggagagtctgatgctcatttttcttgtattgcatgtagc
tttgttggaaaaaagcgcagaaaagaaaagggtacctgtttggtggcactgggaacagat
gatggtgaggttttcactatcaatgctactgcggctgaaatgaagtggaaatcttctgga
catcatcatggaagaattgctgctctctcttttgcaaataaaggacgtaaactttgtgtt
attagtactgatggcgcaacctgtgaaatgaactccgaaagtggagaacttttaaaagaa
acaaaaatttcgaagaaatatatatcttcggctgtatatttttctgacgataaaatatta
gctgcggcaaataccaagataagagtcctcagtttagaagatgggaaagaactactgaag
ttttctacagatgaaggtccagtgcggcatatatctatgttggaggatacaaacctcatt
attacatcaggatttgacgacaagaatcttcaagtgtggaaaaatgaagcaaacaccgaa
atagtaaccagtggacctattctatcaatgagacatccttctttagctattgagtgcaag
agcggctgcaatggagaggatttagctgtactctcggtttcagaaaacggtgtagcttat
atctggaacatgaagaactcatctgaaggaaatatagttccagctaagataaaagttgaa
gctggtgaatctgaaaccgacccaaatgttagcggaaaaaagaaacgccatacttctata
ttagctgctagattgagttctgtggatagtgatgaccgagtaacgggcgttattgtttat
ggctctataaactctccacagttcacttcggtggatgttactagccccggggaggatatc
gtcatcgatgctagagctgatgttcgagaaaatggagttaacgatggaaaagataaaaaa
gatgtaagaggcaagaaacgaactgcatccgatgcagactctgggaatgcagtggtaaaa
tcggataacgatcacggagatcctatggatggagttcaaattgataacgatattgatgag
ccgactatgggtgagaaattggctagcttaaatataaccaaaaatgaaggtgaaagcgaa
gagaaagccgagagttctcctgcaaaacctcctagtgcagactctgttcatgtactgctt
aaacaagcacttcatgcagatgatcggtcccttcttcttgattgcttatttagacaagac
gagaaggttattagaaactcggtttacctcttgaatccatcggaggtcttcaagcttctt
gagtctctcatatctatgatccaatccaggggtgcggttatagcgtgtgctctcccatgg
cttaaaagcttacttcttcaacattctagcagcataatgtctcaagaatcatctttaatt
gccctcaactcgttgtatcagcttatcgaatctcgaatttccaccttcaatcctgcccat
caactatctagttgcctagatttgctttacaccaagactctcgatgacggagttgatgaa
ggagaagggccattggagccgattatttttgaagatgtgagcgatgaagatgaagacggg
tctgaagaagacggtgataacatggaaaccgatgaagaagataacgaagaactggaagct
gttagtaatgttagtgatcttgaaggaagtgatggcatggctgactaa
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