Cynara cardunculus var. scolymus (artichoke): 112511685
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Entry
112511685 CDS
T05604
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112511685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112511685
03036 Chromosome and associated proteins [BR:
ccav03036
]
112511685
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112511685
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112511685
PBAF complex
112511685
GBAF(ncBAF) complex
112511685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
112511685
NCBI-ProteinID:
XP_024973163
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All DBs
Position
LG 4:17348278..17351959
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AA seq
551 aa
AA seq
DB search
MAGGSNNMNSSMKNVGGVGVPTGFGNSGATAPQSMPPPMNHSHHQQPPIHDGGESHFGGH
FQLSEPQAQALAQAQYVQAQAQAQARAAHARFQAQLQAQAQLSHKPNPVGGINSNSNIGV
SSASLATPMNVKRSGQKPSSRPPSSSGAAAGSPLKTMELTPAARRRKRGPPEKQIPDKVA
ALLPESALYTQLLEFEGRVDAALARKKVDIQESIKNPPRVQKMLRIHVFNTFANQSQSGT
QKEQAEQPSWSLKILGRLLENGTDSDRPSLTNPKFSSFFKKVTIYLDQSLYPDNHVILWE
SSRSLALNEGFEVKRNGDKEFTAIIRLEMNYMPEKFKLSPALSEVLGIEVETRPRIIAAI
WQYVKTKKLQIPTDTSFFTCDPPLRKLFGEDKVKFALVSQKISQHLSPPQPIHLEHRIKL
SGDNPVGNTCYDVLVDVPFSLDKDMSNFLESLEKHREIDACDEAICSAIKKIHEHRRRRA
FFLGFSQSPSEFINAFISSQSKDLKTAAGDASRIAEKEHRSDFYNQPWVEDAVIRYLNRK
PTAGSDAPGST
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcggggggtagtaataatatgaacagttcgatgaaaaacgttgggggcgttggtgtt
ccaactgggtttggtaattcaggggcaacagctcctcaatccatgccgccccccatgaac
cattcgcaccaccaacaaccaccaattcatgatggtggtgagtcccattttgggggacat
tttcagttgtctgagccacaggctcaagccctagctcaagctcagtatgttcaggctcag
gctcaggctcaagctcgggccgcccatgctcgatttcaagctcagttacaagctcaagct
cagctttcccacaagccaaatccggtgggagggattaatagtaatagtaatatcggtgtc
tcatcggcttcacttgctacgccgatgaatgtgaaaagatcgggtcagaaaccgtcgtct
cggcctccgagttcttctggtgcggctgctggttcgcctttgaaaaccatggaactcacg
cctgctgctcgtagaagaaaaagaggtccgcccgagaagcaaattcccgataaagtagct
gcccttttgcccgaatctgctctttatacccaattattggaattcgagggccgtgtggat
gctgcccttgcgagaaagaaggttgacattcaagaatcgatcaagaaccctcctcgtgtc
cagaagatgcttaggattcatgttttcaacacttttgcaaaccaatcccaatcggggact
caaaaggaacaagccgagcagccatcatggtctctcaagattctcgggaggctattagaa
aacggaacggattctgacagaccaagtttgacgaatccaaagttttcgtcttttttcaag
aaagtcactatttacttggaccaaagtctctacccggataaccatgtaatcttgtgggaa
agttctcgatctttagcacttaacgagggtttcgaggttaagcgaaacggggataaggaa
ttcaccgccattattagattagaaatgaactacatgcctgagaaattcaagctttcaccc
gctttaagcgaggttctcgggattgaggtggagacccgacctaggattatcgctgcaatt
tggcaatacgtgaaaactaaaaaactacaaatcccgactgatacttccttcttcacatgt
gatcctccccttcggaaactatttggagaagataaagtgaaatttgcgttggtttcccag
aagatttcccagcatttgagtccaccgcagcctatacatttggagcatagaatcaagctt
tccggggacaatccggtgggaaatacgtgttatgatgttcttgtggatgttcctttttcg
ttggataaagatatgtctaatttcttggaaagtttggagaagcatcgggagatcgatgct
tgtgatgaagctatttgctctgcaatcaagaagatccatgaacataggcgtagacgggct
ttctttttgggtttcagtcagtcaccaagcgaatttatcaacgcttttatttcgtcacaa
agcaaggatttgaagactgctgctggtgatgcctctcgtattgctgagaaagagcaccga
tccgatttctataatcaaccatgggtcgaagatgctgttatccgttatctgaacagaaag
ccaacggcaggaagtgatgcacctggaagcacatag
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