Cynara cardunculus var. scolymus (artichoke): 112511741
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Entry
112511741 CDS
T05604
Symbol
LOC112511741
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112511741 (LOC112511741)
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
112511741 (LOC112511741)
REST complex
112511741 (LOC112511741)
Heterochromatin formation proteins
Other heterochromatin formation proteins
112511741 (LOC112511741)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
112511741
NCBI-ProteinID:
XP_024973275
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All DBs
Position
LG_1:complement(12464360..12477104)
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AA seq
1369 aa
AA seq
DB search
MKRLRDDAYGSSQFKRPFGSSRGESYGQPQAPGGGSEGAGVAGASVVGVGVGVGVGGGSS
AQKLTTNDALTYLKEVKDMFQDQREKYDMFLDVMKDFKAQRIDTTGVIARVKELFKGHNN
LIFGFNTFLPKGYEITVIDEDETPPKRTVEFEEAISFVNKIKKRFQNDDHVYKSFLDILN
MYRKEHKGINEVYHEVATLFDDQPDLLDEFTRFLPDASAAASAHHASFGRHAYQRYDERS
SAAVPLRPTQMDKRGRRDRINAPHAERDLSVDCPDTDDKTMMKLHKEQRKRVEKEGRDRR
NSDQDYKDPDLDSNRDIHRLEKRKSARKVEDFGVHSGSAPCDDKDALKSEYILVNLMYLL
IFFLQVSDLLGKHTDLMEGFSAFLERCENIDGFLAGVMDKKALWNVTKSTRTEEKEREHR
REIDAGKEKDRYKEKYWGKSIQELDLSNCQRCTPSYRLLPDDYPIPSVSQRSELGTQVLN
DLWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSIND
RSIGSEAPIRIEEHFTALNLRCIERLYGDHGLDVMDTLRKNPTVALPVILIRLKQKLEEW
TKCRSDFNKVWADIYAKNHYKSLDHRSFYFKQQDSKNLSTKCLVAEIKEIKEKSQKDDDV
LLRIAAGNRHFIMPNLEFEFTDKDIHEDLYKLIKYSCEEICPTKEQLNKVLWLWTTFLEP
MLGVPSRPDDSDGVEDIGTSRHGDAKTEGMPAGESDGSPGADSGTFNLKQGKPVSNGDDN
TSPKKVDSSKNILVNGGTSLKEDGSRLEKEVRNTSVGDKASGSNRPSALAERATDSGPVV
GLVNDNIVSRISTELSGRDATPFRPNSVCEDVHEAKSNIDEVPSSQHTDISRPATLANRS
FALANGSLAKVANVLRYDERSAEPSKFEKEEGELSPNGDFDEVDFAAYGDSGSHAKAKHS
AESSFYRAAREEARQDGGREIDADADDEDSENVPEGGDDVSGSESAADECSREEHEEDGD
RDDLDCKAESEGEAEGIEDGNFVGGDGTSLQSSEHFLMTAKPLAKRVTSPSHDGGKKDCN
VFYGNETFYVLFRLHQVLYERLLSAKLNSTSAEMKWRATKDTSPPDLYSRFMSALYNLLD
GSADNAKFEDDCRAIIGNQSYMLFTLDKLIYKLVKQLQNVAGDETDNKLLQLYEYERSRK
PEKFIDSVYYENAHVLLHDENIYRFQCSSGPSCLVIQLMDDGNEKPEVVAVSVDPNFAAY
LHNDFLSIVPGKKESGIMMQRNKRQFSDMDESSAISAAMEGVHVVNGLEYKMSCSSSKIS
YVLDTEDLLFRERRKRKKRKVSGMSSSSRSSSYWHPQSRVQRFHRFLAL
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgattgcgagatgatgcttacggtagctctcaatttaagaggccatttggttct
tcccgaggagaatcatatggccaaccacaagccccgggaggaggaagtgaaggagcagga
gtggcaggtgcaagtgtagtaggggtaggggtaggggttggggtaggtggcggcagcagt
gcacaaaaactcacaacgaatgatgcattgacgtatttgaaggaggttaaagacatgttc
caagaccagagagagaaatatgatatgtttcttgatgtgatgaaagattttaaagctcaa
agaattgatactactggtgtcattgcaagggtgaaagaattgtttaaaggtcacaataat
ctaatttttgggtttaacactttcttacccaagggttacgaaattactgttattgatgag
gacgagacaccaccaaagagaactgtggagtttgaagaggctatcagctttgtgaacaaa
ataaagaaacgctttcaaaatgatgatcatgtttacaaatcgtttttagacatcttgaac
atgtatcggaaggaacacaagggtatcaatgaagtctatcatgaggttgccacacttttt
gatgatcagccagatcttcttgatgagttcacaagattcttgccagatgcttcagcggct
gcatctgcacatcatgcgtcatttggccggcatgcctatcaacgttatgatgaacggagc
tcagctgcggtcccactcagaccgacacaaatggataagcgaggccggagagacaggatc
aatgctccacatgctgaacgggatctgagtgttgattgtcctgatacggatgataaaaca
atgatgaaacttcacaaggagcagaggaaacgtgttgaaaaggagggcagggataggaga
aacagtgaccaggattacaaagatcctgatcttgatagcaacagggacatccatcgtctt
gaaaaacgaaaatctgcacgtaaagttgaagatttcggagtgcactcaggttcggcccca
tgtgatgataaagatgccctcaaaagtgaatacattcttgtgaatttgatgtatctttta
attttctttttgcaggtttctgatttacttgggaagcacacagatcttatggaaggattc
agtgcatttctggaacgctgtgaaaacatagatgggtttcttgccggtgttatggacaaa
aaagctttatggaacgttaccaaatcaaccaggacagaggagaaagaaagggagcatagg
cgtgaaattgatgctggtaaagagaaggataggtacaaagagaagtattgggggaaatct
atacaagaacttgacctctctaactgtcagcgctgcactcccagttacagacttcttcct
gatgattatccgattccatcagtaagccagagatcagagcttggtactcaagtactgaat
gatctctgggtatctgtgacttctggtagtgaggattactcattcaaacatatgcgtaga
aaccagtatgaagagagcctgtttagatgcgaagatgacaggtttgagctagacatgttg
ttggagtctgtgagttcaactgctaaacgtgctgaggaattactaaacagcattaacgac
cgctcgattggttcagaggctcccattcgtattgaggagcactttacagctctgaattta
cgctgcattgaacgtctatatggcgatcatggtcttgatgtgatggacacactgcgtaaa
aatccaaccgttgcattgcctgttatattgattcgcctgaagcagaaactagaggagtgg
acaaagtgtcgatcagactttaacaaggtctgggctgatatttatgcgaagaaccattac
aagtcgcttgatcaccggagtttctatttcaagcaacaagattcaaagaatttgagcacg
aaatgcttagtggctgagatcaaagaaataaaagaaaagagccaaaaagacgacgatgtg
ctccttcgcattgctgctgggaatagacactttattatgccaaatcttgaattcgagttt
accgacaaggatattcatgaagacttatataaacttattaagtattcatgcgaagagatt
tgcccgaccaaggaacaactgaacaaagtattgtggctttggactacctttttggagcca
atgttaggtgttccttctcggcctgacgattctgatggtgtggaagatatcgggacatct
aggcatggtgatgccaaaactgaaggtatgcctgccggtgagagtgatggaagtccaggt
gcggatagtggtacctttaatcttaagcaaggaaaaccagtcagcaatggagatgacaac
acttcaccaaaaaaagtagattcaagcaagaacatcttggtaaatggaggtacttcgttg
aaagaagatggatcgagactagagaaagaggttaggaacacgagtgttggggataaagcg
tctggctccaatcggccctctgctttagctgaaagagcgacagattctggtccagtagtt
ggtcttgtaaatgataacattgtttccagaattagcacagaattatctgggcgtgatgcg
actccttttagaccaaatagtgtttgtgaggacgtccatgaagccaagtcaaatatcgat
gaagttccttcatctcagcacactgatatctcaagacctgcaacattggcaaatagaagt
ttcgcgttggcaaatggaagtttggctaaagtagccaatgttctgcgatatgatgaacgt
tctgccgagccttccaaatttgagaaagaagagggcgagttatcacccaatggtgatttt
gatgaggttgattttgctgcctatggagatagtggatcccatgctaaagcaaagcatagc
gcggagagctcattctatagagctgcgagagaagaggcgcgtcaggatggtggaagggag
attgacgcagatgctgacgacgaggacagtgagaatgttccagaaggtggtgacgatgtg
tcaggcagtgagtctgctgctgatgaatgctcgagggaagagcatgaagaagacggagac
cgggatgatcttgattgtaaagcagaaagtgaaggagaagcagagggaatagaggatgga
aactttgttggtggagatggcacatcattgcaatcttcagagcattttttgatgacagca
aaaccactggcaaagcgtgtgacttctccatcacatgatggtgggaaaaaagattgtaat
gtcttctatggaaacgaaaccttctatgtgctttttaggctccaccaagtattatatgaa
agactattgtcggctaaacttaattcaacatctgctgagatgaagtggagagctacgaag
gacacttccccacctgacttgtactctagatttatgagtgctctatataatctacttgac
ggatctgctgataatgcaaaattcgaagatgattgccgggcaattattggaaatcaatct
tatatgttgtttactttggacaagctgatttataagcttgtcaaacagcttcaaaatgtt
gcaggtgatgaaacggataacaaacttcttcagttatatgagtatgaaagatctcgaaag
cctgagaaatttattgattctgtatattacgagaatgcacatgtcctcctccatgatgag
aacatatacagatttcagtgttcatctggtccatcttgtttagtcatccagctgatggat
gatgggaatgaaaagcctgaagtggttgcggtttccgtggatcctaattttgcagcttat
ctccacaatgactttctttcaattgtgcctgggaaaaaggaatctggcattatgatgcag
agaaataaacgccaattctcagacatggatgaatcttctgctatatcggctgccatggaa
ggtgttcatgtggttaatgggttggagtataagatgtcttgcagctcatcaaagatctcg
tacgttctcgataccgaagacttgttgttccgcgagcgaagaaaaagaaaaaaaagaaaa
gtctcaggaatgagcagcagtagcagatcatcatcatattggcatccacaatcaagagta
caacgatttcacagatttttagcattatga
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