Cynara cardunculus var. scolymus (artichoke): 112511971
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Entry
112511971 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112511971
03036 Chromosome and associated proteins [BR:
ccav03036
]
112511971
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112511971
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112511971
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112511971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
DUF150_C
Motif
Other DBs
NCBI-GeneID:
112511971
NCBI-ProteinID:
XP_024973501
LinkDB
All DBs
Position
LG 1:complement(1232529..1237142)
Genome browser
AA seq
717 aa
AA seq
DB search
MPSIAVLSETLTPSSDLTTKPKKMKNITSETVGLESSIKKKEKKSKKDKSASQSTDPSSD
TEKSEKKVKRKRKASSDTDNDEGKSDTSSELGEPVNIKTEESMKKSKKKKMKTVEVDEEE
VVIKEDNPNAVSKFRISEPLRNALKAKGIEALFPIQARTFDSIYDGLDLIGKAKTGQGKT
LAFILPILESLINGPEKASRRTGYGRAPTILVLLPTRELAKQVFSDFKAYGEAVGLTACC
LYGGGGASISPQTVQLKRGVDIVVGAVGRVKDHIERGNLDLCSLKFRILDEADEMLRQGF
VEDVEYILGKVNDASNVQTVLFSATLPSWVNQIASKFLKPNKKIVDLVGFEVMKASENVR
HIIMPCSSSARSQVIPDIIRHHSSGGRTIIFTETKDYCSELSGLLVGARPLHGDIQQSVR
EATLAGFRSGKFMTLVATNVAARGLDIHDVQLIIQCEPPRDVEDYIHRSGRTGRAGNSGV
AITLYEPRRSNISKLEREAGVKFEHVSAPQPADIAKAAGADAAEAIIQVADSVVPVFKSA
AEELLNTSGLSPVELLAKALAKSIGYTEIKKRSLLTSMENYVTLLLEAGKPVYTPSFAYG
VLRRFLPEEKVESIQGLALTADQRGAVFDVAVEDLDTFLTGQENASGVSLEVVKELPQLQ
EREQSRSRFGGGRGGYGGGGGGFSRGGRGGGFSDRRFSRGSGGGGGGRGGRGGYKKW
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccttccattgccgttttgtctgaaaccctaaccccatcatccgacctcacaaccaag
cctaagaagatgaagaatatcacctccgaaaccgtcggactcgaatcttcgattaaaaag
aaagagaagaagagcaagaaagacaagtctgcatctcaatcgactgatccttcttccgat
actgaaaaatccgagaaaaaggttaagaggaaacgtaaggcttcttcggatacagataac
gacgaagggaaaagcgataccagttctgagttaggcgagcctgttaatatcaagactgag
gagtcgatgaagaaaagtaagaagaaaaagatgaagacggttgaggtagatgaagaggag
gttgtgattaaagaagacaatcccaatgccgtttccaagtttaggatttctgagccattg
aggaatgctttgaaggccaaggggattgaggctttgtttcctattcaggctcggaccttt
gattcgatttatgacggtcttgatttgattgggaaagctaaaactggtcagggaaaaaca
ttggcattcattttgccaatattggagtccttaataaatggaccggagaaagcatcacga
aggaccggatatggcagggcaccaacaattcttgtgcttttgccaactagagagttagca
aaacaggtattttcagattttaaagcctatggtgaggctgtgggtctaactgcgtgttgt
ttgtatggtggaggaggagcatccatttctcctcaaactgtgcaactgaaaagaggggtg
gatattgtcgttggagcagttggccgtgttaaggatcacatcgagaggggtaatcttgac
ttgtgctcattgaaattccgtatccttgatgaagctgatgaaatgttaaggcaaggcttt
gttgaggatgttgaatatattttaggcaaggtgaatgatgctagcaatgttcaaactgtt
ctgtttagtgcaacattaccatcttgggtgaatcaaattgcatcgaagtttttgaaacca
aacaagaagattgtggatcttgttggttttgaggtaatgaaggctagtgagaatgtgaga
cacatcatcatgccctgctctagctcagcgaggtcccaggtcattcctgacatcattcgt
catcacagcagtggaggacgaactattattttcactgagacgaaggattattgttctgaa
ctttctggactgctagttggtgctcgtcctcttcatggggacattcagcagtctgtgcgt
gaggcaacacttgcgggattccgatcaggcaagttcatgacactagttgctacgaatgtt
gcagcacgaggattggatattcatgatgttcagttgattatccagtgtgaaccaccccgt
gacgttgaagattacattcatcgatctgggaggacaggaagagcaggaaattctggtgtt
gccattacgctttatgagccaaggagatctaatatctccaagctagaaagagaagcaggt
gttaaattcgaacacgtatctgctcctcaaccggctgatattgcaaaagcagctggtgca
gatgcggcagaagcaataattcaagttgctgatagcgtggttcctgtcttcaagtccgct
gcagaggagttgttaaatacttctggactgtcacctgtagaactgcttgcaaaggcgcta
gccaagagtattgggtatactgagatcaagaagaggtcacttctgacatccatggagaac
tacgtgacactgcttcttgaagctggaaaaccagtttacaccccttcatttgcatatggc
gttttgaggaggtttcttcctgaagagaaagttgagtcaattcaaggtcttgcactaaca
gcggatcaaagaggtgccgtttttgacgtcgctgtggaggatttggacacttttcttact
ggtcaggagaatgctagcggtgtaagcttggaggttgtaaaagaattgccacaactgcaa
gaaagagagcagagtaggtcaagatttggaggaggtcgtggtggttatggaggcggtggt
ggtgggttttctcgtggtggacgtggtggtggtttctctgatcgtcggttttctagaggc
tctggaggtggaggcggtggtagaggcggtcgtggggggtacaaaaagtggtaa
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