Cynara cardunculus var. scolymus (artichoke): 112512179
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Entry
112512179 CDS
T05604
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112512179
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112512179
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
90S particles
Helicases
112512179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
DHX37_C
HA2_C
HA2_N
AAA_22
ATPase
HTH_51
nSTAND3
AAA_19
ResIII
Sigma54_activ_2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
112512179
NCBI-ProteinID:
XP_024973810
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All DBs
Position
LG 5:112155..119814
Genome browser
AA seq
1311 aa
AA seq
DB search
MISQETMEALEGLDSGSHLSSLNGDDSNMMILMHKKKKXNKERSLKQGSLKSKKRERPKP
SSSQKXKLKKLDEEKEKSVLLSKSLETLEKYKIQEDAYSLMWSSRNLGQVETAREKRRRE
MQFAKTGLVLQHSDRPLKRRASNSYSCXIELASGEIYSNQVDTEDVFIQPMNRDIKIANV
KPSPRSSVELPCSKGAEAIGALDPSSSAKKVDNEHNDTPMLDDPKASLPTSSCSRSIAKS
VEVSCFANSTVSCPSPKPLAXPTVVHVSRPKEVESNRMDLPIVMMEQEIMEAIYENTNVI
ICGETGCGKTTQVPQFLYEAGFGSKQCSTRSGIIGVTQPRRVAVLATARRVAFELGLRLG
KEVGFQVRHDKKIGENCSIKFMTDGILLRELQNDFLLKRYSAIILDEAHERSLNTDILTG
MLSRIIVERQKIHEQQKSYELSTGKMISPEKKIFPLRLILMSATLRVEDFVSDGKIFANP
PPVIEVPTRQYPVTTHFSKRTDIVDYLGQAYKKILSIHKRLPSGGILVFVTGQREVEYLC
RKLRNASLEMTKRKTNVNSXAPVVTDTLIEYDMKEIDEAFKIEGQSSHQQTDRFSSFDED
DCDLSEDESFASFESDEESDVETVVDKVNVLKPDNVLGENGNFASLKAAFEALSGKRTLD
SKSDSSQDNPTTPGDSKQPDSNSVARQEANDVSPGALCVLPLYAMLPASAQLRVFEEIKE
GERLIVVATNVAETSLTIPGIKYVVDTGREKVKNYNSSNGMETYEVQWISKASAAQRAGR
AGRTGPGHCYRLYSSAVFNNIFADFSTAEILKIPVDGVVLLMKSMGIKEITKFPFPTPPE
AKALFEAEVCLKSLQALDCDGRLTPLGKAMSHYPMSPRHSRMLLTVIQILNKGKGSARRN
LILGYALAAAAALSLSNPFVMQFEGGXADIDTLKQDQNSNVISKDEKVKKRKLKENAKTS
RAKFSNPTSDALTVAYALQCFELSENQVEFCDENALHLKTMEEMSKLRKQLLHLVFNQTL
CDTQQELVWTYGNMEDVERAWMVYSNKHPLMLNEEELLGQAICAGWADRVARRVRGISGL
SEEDRKVNAARYEAHKVSETVFLHRWSSVSRTAPEFLVYSELVDRKRPYIHGATRVKPEW
LARYSEYLCSFSAPLMDPRPYYEPQSDQVYNWVSVTFGDHLWQLPLHSLAVKDEKVGVTV
FCYSLLEGMVLPCVRRVRKFMAAQPGIILKAETLGHKRFGKLVYELRKRHIQSCRMLRKV
WDENRATFYREVLDWFDEGFQNDFDDLWENMQGEVRLDPEQRFVKKEKSRS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgcaggaaacaatggaggccttggagggtttagacagtgggtcacatttatca
agcttaaatggagatgatagcaacatgatgattttgatgcacaagaaaaagaaaawtaat
aaagagagaagtttgaaacagggatctctgaagtcaaagaaaagggagagacctaaacca
agcagctcccagaagaraaagctgaagaagcttgatgaggaaaaggagaaatcggttctc
ttatctaaaagcctagagacattagagaaatacaaaattcaagaggatgcttattcactc
atgtggtcttcacgcaatttgggccaggttgaaactgcccgtgagaaacgcagaagagaa
atgcagtttgctaagacgggtttggtactgcagcatagtgatcgacctttaaaaagaaga
gctagtaacagttattcttgtgrgattgaacttgcttcgggtgaaatttactcaaaccaa
gttgacacagaggatgtctttattcagcccatgaacagagatatcaaaatcgcaaatgtc
aaaccttctccgagatcttctgtagagctaccatgcagcaaaggagctgaagccattggt
gcattagacccttcttcgtctgctaagaaagttgataatgagcataatgacacacccatg
ctagacgatcccaaagcttcattgccaacatctagctgtagtagaagcatcgcaaaatca
gtggaggtaagctgctttgcaaacagcacggttagttgtccatcaccgaaacctctagcg
rtccccacagtggttcatgtatctaggccgaaggaggttgagagcaatagaatggatctt
cctatagtcatgatggagcaggagataatggaagccatatatgagaataccaatgtcatc
atatgtggagaaacagggtgtggtaagactactcaagttcctcagttcctatatgaagca
ggatttggttcaaaacagtgtagtactcgaagtggcattattggtgttacccaaccacgt
cgagttgctgtccttgcaactgcaaggcgggtggcatttgagcttgggcttcgtctaggc
aaggaggtcggtttccaagttaggcatgacaagaagattggagagaactgctccatcaag
ttcatgactgatggaatattgcttcgagaattgcagaatgattttctgttgaagcgatac
tcagcaataatattggatgaggctcatgaaaggagtctgaatacggacatacttactgga
atgctatctcgcattatagtagaacgccagaaaatacatgaacagcagaaatcatatgag
ctttcgaccggaaagatgattagccctgaaaagaagatctttccgttaagactcatattg
atgagtgccaccttgcgggttgaagactttgtgtccgatggtaaaatctttgctaatcca
ccgcctgtaattgaagttccaactcgacaatatccagtaactacacatttctcaaagaga
acagatatagtggactaccttggccaagcctataaaaagatattgtcgattcacaagaga
cttccatctgggggaatacttgtatttgtgacgggccaaagggaagtagaatacttgtgt
cgtaagctgcgtaacgcatctcttgagatgacgaagaggaagaccaatgttaatagtgak
gcacctgttgtcaccgacacgcttatagaatacgacatgaaggagattgatgaagcattt
aagatcgaaggacaatcaagccaccaacaaacagacaggtttagttcttttgatgaagat
gattgtgatttgtcagaagatgaatcttttgcttccttcgaatctgatgaagagagtgat
gtggagacagttgttgataaagtgaatgtgttgaagcctgataatgttttaggggaaaat
ggaaattttgcttcactgaaagctgcttttgaagctttgtccgggaaaagaactttggac
tctaagtcggatagctctcaggataatcctactactccaggtgattcaaaacaaccagat
tctaattctgtagcgaggcaggaggcaaatgatgtgtctcctggtgcattgtgtgttcta
cccctctatgccatgcttcctgcatctgcacaacttcgtgtgtttgaggagattaaggaa
ggagaacgtttaatagtcgttgccactaatgttgctgaaacctctctaacaatcccaggc
ataaagtatgtggttgatacaggaagagaaaaggtcaagaattacaattcttccaacgga
atggaaacatatgaagtacagtggataagtaaagcatctgcagctcagcgtgctggaaga
gctggaagaacagggcctggccactgttatcgtctctattcttctgctgtctttaacaac
atatttgctgacttttcaacggctgaaatcttaaaaatacctgttgatggtgtggttctt
ctcatgaaatccatgggtattaaagagattacaaagtttccatttcctactcctcctgaa
gctaaagccttgtttgaagcagaggtttgtttaaaatctctccaagcacttgattgtgat
gggaggttaacacctcttgggaaggccatgtcacattatccaatgagtcctcgccattca
cgaatgcttcttacagtcattcaaatcctgaacaagggaaaaggttccgcaagacgaaac
ttgattctaggatatgcacttgcggctgctgcagctttgagcttgtcaaatcctttcgta
atgcagtttgaaggagggygtgctgatatcgacactttgaagcaggatcaaaactcaaat
gttatcagtaaggatgaaaaagtgaagaaaaggaaactgaaagaaaatgctaaaacatcc
cgtgctaaattttcaaaccctaccagtgatgctttaacggtggcttacgccttgcagtgc
ttcgaactatcagaaaaccaggtggaattctgtgatgagaatgcattacaccttaaaacc
atggaggaaatgtcaaagttgagaaaacagcttctgcatttagtgtttaaccaaaccctg
tgcgacacacagcaggaacttgtgtggacttatgggaatatggaggatgtagaacgagct
tggatggtttattctaataagcatcccctgatgttgaatgaggaagagcttttgggccaa
gctatatgtgccggctgggctgatagagttgcgagacgtgttagagggatttcaggatta
tcggaggaagacaggaaagtgaatgcagcamgatatgaagctcacaaagtaagtgaaaca
gtgttccttcatcgctggtcatctgtttcgagaacagccccggagtttttggtttacagc
gaacttgttgacaggaaacggccatatatacatggagccacaagagtgaaaccggagtgg
cttgctagatattcggagtatctttgcagtttctctgctccacttatggaccctagacct
tactacgagcctcagagcgaccaagtgtataactgggtgagtgtaacttttggcgaccat
ttatggcagctcccactacacagtttggctgtgaaagatgagaaagttggggtgactgtt
ttctgttattctttgctcgagggaatggtgttgccatgtgtaagacgagtgcggaagttc
atggcagcccaacctggcatcattttgaaagcagagacattaggccataagagattyggg
aagcttgtgtatgagttaaggaaaaggcatatccaaagttgtaggatgctaaggaaggta
tgggatgagaatagagcaacattttaccgggaagttttggaytggtttgacgagggattt
cagaatgattttgatgatttatgggaaaatatgcagggagaagtacgtttagatcccgaa
caacggtttgtgaagaaagagaaaagcaggagttga
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