Cynara cardunculus var. scolymus (artichoke): 112512211
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Entry
112512211 CDS
T05604
Name
(RefSeq) LOW QUALITY PROTEIN: myosin-6
KO
K10357
myosin V
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
112512211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112512211
04131 Membrane trafficking [BR:
ccav04131
]
112512211
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112512211
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ccav04812
]
112512211
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
112512211
mRNA cycle factors
P-body specific factors
112512211
Membrane trafficking [BR:
ccav04131
]
Others
Actin-binding proteins
Myosins
112512211
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
112512211
Cytoskeleton proteins [BR:
ccav04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
112512211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_16
Hpr_kinase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
112512211
NCBI-ProteinID:
XP_024973845
LinkDB
All DBs
Position
LG 5:2451220..2468113
Genome browser
AA seq
1499 aa
AA seq
DB search
MXAAVSLGVGSLVWVEDPDEAWMDGEVIAVTXEEIKVASTSGKTVVAKSSNVYPKDAEAP
PCGVDDMTKLAYLHEPGVLNNLRSRYDINEIYTYTGSILIAVNPFTRLPHLYDSHMMAQY
KGAAFGELSPHPFAVADAAYRVMINEGISQSILVSGESGAGKTESTKQLMRYLAYMGGRA
STDGRSVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLE
RSRVCQLSDPERNYHCFYMLCAAPPEDLKRYKVGDPRTFHYLNQSNSYKIDGLDESKEYF
ATRNAMDVVGISSEEQDAIFRVVAAILHLGNIEFTKGKEMDSSTPKDEKSWFHLKTAAEL
FMCDVKALEDSLCKRVIVTRDETITKWLDPESAAVSRDALAKVVYSRLFDWLVDRINSSI
GQDPDSKYIIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIN
WSYIEFIDNQDILDLIEKKPGGIIALLDEACMFPRSTHDTFAQKLYQTFKNHKRFTKPKL
ARSDFTICHYAGDVTYQTELFLDKNKDYVIAEHQALLSASTCSFVSSLFPISSEDSSKSS
KFSSIGSRFKQQLQQLLETLSSTEPHYIRCVKPNNLLKPAIFENHNVLQQLRCGGVLEAI
RISCAGYPTRKPFDEFVDRFGILAXEVLDGNDEIHACKRLLEKVGLEGYQIGKTKVFLRA
GQMAELDARRTEVLGRSASIIQRKVRSFIARKSFVLLRRSVLQIQSVCRGELTRRVYESM
RREASCLRIQRNLRMYLARKAYKEFXFSAVSIQTGLRGMAARNELRFRRQTKAAILIQSH
CRKYLAXLHFTKAKKGAVTIQCAWRGKVARKELRKLKMAARETGALQAAKNKLEKQVEEL
TWRLQLEKRMRADLEEAKTQENAKLQSALQHMQLQFKETKELLVKERETVKKAVERVPVI
QEVPVVNHELTNKLASENEKLKALVGSLEKKIDDTEKKYEETNKLSEERLKQALDAETKI
IQLKTAMQSLQEKVSDMASENQILRQKAFSSPATRDPQTPEMKSMTNGHLTNEEPQTPAR
NLVTEFDSKVKRPPIDRQHENVDALIECVMKDIGFSQGKPVAAFTIYKCLLHWKSFEAER
TSVFDRLIQMIGSAIEDQDNNEHMAYWLSNASTLLFLLQRSLKSDGANXVRKPPPPTSLF
GRMTMGFRSSPSSVNLSAAAAALEVVRQVEAKYPALLFKQQLTAYVEKMYGIIRDNLKKD
LGAFLTSCIQAPRASKGVLRSGRSFTRDSQSNHWQSIIDCLNTLLSTLKENFVPPIIVQK
IFTQIFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGSAWDELKH
IRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMR
ILMTEDSNNAASNSFLLDDNSSIPFSVDDLSSSLQVKDFADVKPAVELVENPAFQFLHE
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgtaggcggcagtcagtctaggggtcggatcacttgtctgggtggaggatccagatgag
gcttggatggatggggaagttattgcggttaccrgtgaagaaatcaaggttgcttctact
tcaggcaagacggttgttgccaagtcatcaaatgtatatcccaaagatgccgaagcacca
ccatgcggagtggatgatatgacmaagctggcttatttgcatgaaccaggggttttaaat
aacttaagatctagatatgatattaacgagatatatacttatacagggagtatattaata
gctgtaaatcctttcacaagattgccacatttgtatgatagccatatgatggcccagtac
aaaggggcagcatttggggaattgagtccccacccttttgcagttgcagatgcagcatac
agggttatgatcaatgaagggattagtcagtctattttggttagtggagagagtggagct
ggtaaaactgaaagcacaaaacagctgatgcgctatcttgcttacatgggaggtagagct
tctacggatggaaggagtgttgaacagaaagtcctagagtccaatcctgttttggaagct
tttggtaatgcgaaaactgttcgaaacaataattcgagtcgtttcggcaagtttgtggag
attcagtttgatcagaaggggagaatctcaggrgctgctatcagaacttatttgttggaa
agatctcgtgtctgtcaactatcggatcctgagaggaattatcattgcttctacatgctt
tgtgctgcaccgccggaggatctaaaaagatacaaagtgggagatccaaggacattccat
tatcttaatcaatcaaatagctacaagatagatgggttagatgaatcaaaagagtacttt
gctacaaggaatgcaatggatgttgttgggatcagctctgaggagcaggatgcaattttt
agggttgtagctgcgatccttcatctggggaacatagaatttacaaaaggaaaggaaatg
gattcatctacgcccaaagatgaaaaatcttggttccacctaaaaaccgctgcggagctg
ttcatgtgtgaygtgaaagctttagaggattctctatgcaaacgtgtaattgtaacacgt
gatgagaccatcaccaaatggctagatccggaatctgctgctgtcagtagagatgcatta
gcaaaagttgtttactcgaggttatttgactggcttgttgataggattaatagctcaatc
ggtcaagacccagactcaaaatacataattggagtgctggacatatatggatttgagagt
ttcaagacaaacagcttcgagcaattttgcatcaatttgacaaatgagaaactccaacaa
cattttaatcagcatgtcttcaaaatggaacaagaagaatatacaaaagaagaaattaat
tggagctatattgagtttattgacaatcaagatatcttggatctcattgagaagaaaccg
ggcggcattatagctcttctagatgaagcttgtatgtttcccaggtcaacacatgacaca
tttgcacaaaagctgtaccaaactttcaagaatcacaagcgtttcaccaagccaaaattg
gctcgttcagacttcacgatttgtcattatgccggagatgtcacatatcaaactgagctg
tttttggataaaaacaaagattatgtcattgctgaacatcaagccctcttgagtgcttcc
acttgttccttcgtttcaagcttgtttccgatttcatccgaggattcctccaaatcatca
aagttctcttcaattggttcgcggtttaagcaacaactgcaacaactgctagaaactttg
agttcaactgagcctcattatattcgttgtgtaaagcctaacaatctyctcaagcctgct
atttttgaaaatcataatgttctacaacaactccgatgtgggggagtcttggaggcaatc
aggataagttgtgctgggtatcctaccagaaaaccatttgacgagtttgtggatcgattt
ggcatcttggctyctgaagttttggatggcaacgatgaaattcatgcttgtaagaggctt
ctggagaaggttggacttgaaggctatcagattggtaaaacaaaggtgtttcttagggct
ggtcagatggcagagcttgatgctcgccggactgaggtcttaggtagatcagctagcatc
attcagagaaaagttcgttcatttattgctcggaaatcttttgtattgttacgtcgatct
gtcttgcaaattcaatctgtttgccgaggtgaacttactcggcgagtttatgaaagcatg
aggagagaagcttcttgtttacggattcagagaaatttgcggatgtatcttgctaggaaa
gcttacaaggagtttcrcttctctgctgtttctatccaaacaggtttacgggggatggct
gcacgtaacgagcttcgatttagaaggcagacaaaagcagcaatccttattcagagccat
tgccgcaagtacttggcccrcttgcatttcaccaaggcaaagaagggtgcagttactata
caatgtgcatggaggggaaaagttgctcgtaaagaactacggaagcttaagatggctgcg
agggaaactggtgctctgcaagctgcgaaaaataaacttgagaagcaagttgaggaactg
acatggagactgcagcttgagaagcgcatgagggctgacttggaagaagccaaaacacag
gaaaatgcaaaactacaatctgctttgcagcatatgcaacttcaattcaaagagactaaa
gagttgctcgtgaaggaacgagagactgtcaaaaaggcagttgaaagagtcccagtcatc
caggaggtcccggttgttaaccatgagcttactaataagcttgcttctgaaaatgagaaa
ctcaaggctttagtcggttctctagagaagaaaatcgatgatacagaraaaaaatatgaa
gaaacaaacaaactcagtgaggagaggttgaaacaagctttggatgctgagacaaaaatt
attcagttaaaaactgctatgcagagtcttcaggaaaaggtttctgacatggcatctgag
aatcagattcttcgacaaaaagcattttcttcacctgctactcgtgatccacaaactcct
gaaatgaagagcatgacaaacggtcaccttacaaatgaggagccacaaacacctgctagg
aatttggtgactgaattcgacagcaaggttaaaagaccaccgattgatcgtcagcatgag
aatgttgatgcactaatcgagtgtgttatgaaagacattggattcagtcaaggcaaacct
gttgcagcatttactatatacaagtgccttctccattggaaatcttttgaagccgaaagg
actagtgtgtttgatcgtcttatacagatgattggttcagcaattgaggatcaagataat
aacgaacacatggcatattggttatcaaatgcatctaccttgttgttcttacttcaaagg
agtcttaaatctgatggtgccaatrcagttcggaaacctccacctccaacttcactgttt
gggagaatgacaatgggatttcgttcatccccatcttccgtcaacctttctgcagcagca
gctgcacttgaggtagtacgtcaggttgaagccaaatacccagccttgcttttcaaacag
caattaacagcatatgtggagaaaatgtatggtattatccgtgacaacttgaagaaggac
ttgggagcattcctcacctcatgtattcaggcaccacgagcatccaagggagtgctacga
tcaggccggtccttcaccagagattctcaatccaatcactggcaaagcatcattgattgt
ctgaatactctcctcagtacattgaaagagaattttgttccccccataatcgttcagaag
atatttactcaaattttctcatatatcaatgtacaactatttaacagtcttytactgcgc
cgtgagtgttgtacgttcagcaatggagaatatgttaaatctgggttagcagagttggag
ctgtggtgttgtcaggcaaaagaagagtatgctggctcagcttgggatgaacttaagcat
attagacaagcggttgggttcttggttatacatcaaaagtacagaatttcatacgatgaa
atcatcaatgatttgtgcccgattctaagcgtccagcaattgtatagaatatgcactctt
tactgggatgacaactataacacccgaagtgtatctccagatgtcatttcaagcatgagg
atattgatgaccgaggactccaacaatgctgccagcaattcgtttttactggatgacaat
tccagcataccgttctctgtcgatgatctctcaagttccctgcaagtaaaagattttgca
gacgtgaaacccgcggtcgaacttgtcgagaatccagccttccaatttttacacgagtaa
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integrated database retrieval system
