Cynara cardunculus var. scolymus (artichoke): 112512342
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Entry
112512342 CDS
T05604
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112512342
09123 Folding, sorting and degradation
03018 RNA degradation
112512342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112512342
03041 Spliceosome [BR:
ccav03041
]
112512342
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112512342
mRNA degradation factors
5'-3' decay
Lsm complex
112512342
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112512342
Complex C
U2 snRNP components
112512342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
Motif
Other DBs
NCBI-GeneID:
112512342
NCBI-ProteinID:
XP_024974006
LinkDB
All DBs
Position
LG 5:complement(794025..798319)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKFPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcgtacttcaaggatttggtgggaagagaagtgaccgtggaactgaag
aatgatttggctataagaggaactctccattcagtcgatcaatatctcaatatcaagctc
gagaacaccagagtcgttgatcaagaaaagtttcctcacatgctttcagtgaggaactgc
ttcatccgaggatcggtggtgagatatgtgcagttgccgccagagggagtcgacatcgaa
ctgctccacgatgccactcgacgtgaagctcggggtggttag
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