Cynara cardunculus var. scolymus (artichoke): 112512803
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Entry
112512803 CDS
T05604
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
KO
K08775
breast cancer 2 susceptibility protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
ccav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112512803
03460 Fanconi anemia pathway
112512803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112512803
03036 Chromosome and associated proteins [BR:
ccav03036
]
112512803
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112512803
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112512803
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
112512803
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
112512803
FA (Fanconi anemia) pathway
Downstream FA components
112512803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Tower
Motif
Other DBs
NCBI-GeneID:
112512803
NCBI-ProteinID:
XP_024974712
LinkDB
All DBs
Position
LG 5:complement(10661002..10672005)
Genome browser
AA seq
1195 aa
AA seq
DB search
MSTWQVFSDTGSNFRWQCSHAKVSSESQKAPVEKPSSPHHLPSIADILVQGYSKLYENQS
DEIETQPTFRNGLGKPVAVKQSSLAKASSILGYLDDGATADTGYSELEDKSKIVGTPFTF
RTGLGKSIAIKQSSMAKALSMFGGQDNDAFLDTGCLKVSEDGNDKATTPLTYQTGSGKLV
ATRKSSLEKVSSILGDQDDVAISGGSVGRDDGNNCMNSMFQTGSGKAVNICSMGLIKART
LLGLEENSDHDETSKGLEQSREHANVGEFFMCPSSSSLPMTSAGTNFRFQDTKSVPVSKF
KFQSGVYEGEIKEVAQRSVCSASRPPSIKFYTAGGRSVKVSGDALKRARSLLGDPDLGNF
LKEGDAGSPVFSSDKNSNFGDNMLNKENNVCPFFSDGTQKAKNMSNNFVSPVRSTLSDKK
TAIRLENIGLRSNLIKEFDAVEHDKTIKQWALVDNSTTLGVSSARKSLSGPLVDISNTIG
LRSADNKQVTGEKRKVSSRKYTSPFKRPRNSKFIPPLDKKSTLVPNGTMPKTTDGSCRKR
RVSTLYPFQFPRKYIKEYFGEPPSFENALENLPEWLRKINPENADKHMFEDESGLKCFGA
DSFFHMLASSGSSTLSKEWIANHYRWIVWKLACYERCYPAKSSGKLLTASNVLEELKYRY
EREVNNGHRSALKRILEGDALPSSPLVLCIASIQLKRDAELDTEVISTSNAIDSSTVTSI
ELTDGWYSVKGLLDGLLLKQLVAGKLFVGQKLRICGAGLCGWNAPVSPLEASTMISLCLH
INGTYRAHWADRLGFCKSGCIPLAFKCIKGSGGVVPSTLVGVIRIYPVLYKERLTDGGFV
VRSERMESKRMQLYDQRRSSIVEGVMSEFQRGLKSFQIDDEQNTGDEGKKILQLLEKAAE
PEVMMAEMSSEQLTSFATYQAKIEATRQSEMQKSIEKALEEAGLSSREVNTLMRVRVVGL
TSKSYIQKSFPQQGLITLWNPTEKQQLELVEGQAYAVTGLTPINSDSDTIYLRARGSTTK
WQPLSQSMSDQFLPFFSPRKPISLSKMGGVPFSSEFDVAAFVIYVGEVHTSAHQNRQWVF
VADGTSISHPHELSDALLAISFCSPSVDCDSTVPINYNLVGSTVGFCNLIKSAKDQTNHI
WLAEATENSTYFLSYDSTNSQHLKTAAASADQWAKASNLMIEKLKGKISSIVARK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgtggcaagttttctctgacaccggaagtaatttccggtggcaatgttctcac
gcaaaggtctcaagtgaatctcaaaaagccccagttgagaaacctagctctcctcatcat
ctcccttctatcgctgatatcttggttcaaggatattcgaaactatatgagaatcaaagt
gatgaaattgagacccaaccaactttccgaaatggattggggaagccggttgctgtgaag
caatcttccttagctaaagcatcatctattcttggatatctagatgacggagccactgca
gatacaggatattcggagctagaggataagtcaaaaatagttggcacccctttcacattt
cggactggattagggaaatcaattgctataaagcagtcttccatggcaaaagcactatct
atgttcggaggccaagacaatgatgcttttctagacacaggatgtctgaaggtaagtgag
gatggcaatgataaagctacaactcctttgacatatcagaccggatcagggaaattggtt
gcaacaaggaagtcttccttggaaaaggtatcatctattcttggagaccaagatgatgtt
gctatttcaggtggatcggttggtcgagatgatggaaacaattgcatgaattccatgttc
caaacagggtcagggaaagctgtaaacatatgttcaatgggtctcattaaagcgagaaca
ttgttaggattggaagaaaattctgatcatgatgagacttccaaaggtcttgaacaatca
agagaacatgcaaatgttggtgaattcttcatgtgtccatcttcttcaagtcttccgatg
acaagtgctggaactaacttccggtttcaagatactaagtctgttccggtttcaaaattt
aaatttcagtctggtgtatatgaaggtgaaatcaaggaagttgctcagcgttctgtttgt
tctgcttctagaccaccatctatcaagttttatacagctggtggaagatctgtgaaagtt
tctggtgatgccttgaaacgagcaaggagccttctaggagatcccgacttggggaatttt
ttgaaggaaggggatgcaggttctcctgtattttcatctgataagaacagtaactttggg
gataacatgttgaacaaagaaaataatgtgtgtcccttttttagtgatggtacacaaaaa
gcaaaaaatatgtctaataacttcgtttccccggtaagatcaactttatctgataagaag
acagcaatcaggttagaaaatataggtctgagaagtaatttgatcaaagaatttgatgca
gtggaacatgataagactatcaagcaatgggccttggtcgacaatagtaccactttaggt
gtttcctctgcaagaaagtctttgagtgggccattagtggatatttcaaatactattggt
ttgcgtagcgctgacaacaaacaagtcacaggagaaaagagaaaagtgtcaagtcgaaaa
tatacatctccatttaagaggcctcggaattccaaatttattcctccattggacaaaaag
tcaacactagttcctaatggtacaatgcccaaaacaactgatggatcatgccgcaaaaga
agggtttccactctatacccatttcagttccctcgcaagtacatcaaggagtacttcgga
gagcctccatcctttgagaacgcgcttgagaacttgcctgaatggttaagaaagataaat
ccagagaatgcagacaaacacatgtttgaagatgaatctggtttaaaatgctttggagcg
gattccttctttcacatgttggcttcatcaggatcttcaactctttccaaagagtggatt
gcgaatcattacagatggatagtctggaaacttgcatgctacgagagatgctatcctgct
aaatcatctgggaaacttttgactgcttccaatgtgcttgaggaattgaaatatagatat
gagagagaagttaacaatggtcacagatcagcgctgaagagaattcttgaaggagatgct
ctcccttcttcacctttggtactctgcatagcatctatacagttaaagcgtgatgcagaa
ctagatacagaggttatttctacgtcaaatgccattgacagttctacagttacaagcata
gaactaacggatggatggtactcagtgaaaggtctcttggatggattgcttttaaagcaa
cttgttgctggaaaattgtttgtaggacaaaaactaaggatctgtggagctggtttatgt
ggttggaatgcacctgtttcaccccttgaggcatcaacgatgattagcttatgcttgcac
attaatgggacatatagagctcattgggctgaccgtttgggattctgtaaaagtggttgt
attccattagcatttaagtgcattaaaggttctggaggggtggttcccagcactttagtt
ggagtcatccgtatataccctgttctatacaaggaaaggttaactgatgggggttttgtg
gtgagatcagagaggatggaaagcaaaaggatgcaattgtatgaccagagacgttcaagc
attgtggagggtgttatgtccgagtttcaaagggggctcaagagcttccaaattgatgat
gagcaaaatactggtgatgaggggaaaaagattttacagctactagaaaaagctgctgaa
ccggaagttatgatggctgagatgagttcagaacaactgacttcatttgctacttatcaa
gcaaaaattgaggcaactagacagtcagagatgcaaaaatcaattgaaaaggcgttagag
gaagctggactaagtagtagggaagtcaacacactcatgagggtgagagtggttggttta
actagtaaaagctacattcagaagagcttcccacagcagggcttgataacactatggaac
ccaactgagaaacagcaattggagttggttgaggggcaagcatacgctgttaccggtctt
acaccaattaactctgattcagatactatttatttgcgtgctagaggttctacaaccaaa
tggcagccattgtctcagtccatgagcgaccagtttctgcccttctttagtcctcgaaaa
ccaatatcattatcaaaaatgggtggagttcccttctccagtgaatttgatgttgctgca
tttgttatctatgtgggtgaggtgcatacatcggctcatcagaataggcaatgggttttc
gtggcagacggcactagtatttctcatccacacgagctgtcagatgctttgcttgccatt
agcttctgttcaccatctgttgactgcgattccactgtaccaatcaactacaatcttgta
ggatcaacggttggcttttgtaatctcatcaagagtgccaaggaccagacaaatcacata
tggttggctgaagcgacggaaaactctacatactttctaagttatgattctactaattct
caacacttaaaaactgcagctgcttctgctgatcaatgggcaaaagcttctaacctgatg
attgagaagctaaagggaaaaatatcatctatcgttgccagaaagtaa
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