Cynara cardunculus var. scolymus (artichoke): 112513018
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Entry
112513018 CDS
T05604
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112513018
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112513018
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Toxin_13
Motif
Other DBs
NCBI-GeneID:
112513018
NCBI-ProteinID:
XP_024974912
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All DBs
Position
LG 1:complement(6127545..6131215)
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AA seq
494 aa
AA seq
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MHHTHSSNTYILLFCLLTSLFSVIRATFNLTLPHQHPNPEDVVQEVQRRLNVSIYRRDML
DTGGGCLTGNPIDDCWRCDPNWANKRQRLADCAIGFGKAALGGKGGQIYVVTDSSDHDVV
SPTPGTLRYGVLQTEPLWIIFSSNMVIKLKHELIVNSYKTIDGRGANVAITGGGCITLQY
VSNVIIHNIRVYDCKPSGNTNIRSSPTHVGFRGKSDGDGISIAGSRNLWIDHCSLSHCTD
GLIDAVLGSTAITISNSYFTHHNEVMLMGHDDGYMPDKGMQVTFAFNHFGRGLIQRMPRC
RHGYFHVVNNDFTEWKMYAIGGSANPTINSQGNRYIAPPEADAKEVTKRVDTDEGNWAGW
NWRTDGDIMVNGAFFVPSGEGMSTTYANAASYEPKSAALVTQLTMNAGVFGGPRDDDGSE
SFSDGTVTGDSASGNTGRGGGGGDDGDYFGMIFGGGSVATSPPSTIVIFVVLVLYIISTT
NNGGGLFPLLLLLL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatacgcactcttctaatacctacattctcttgttttgcctcttaacatctctc
ttctctgtcattagagctacttttaacctcacactacctcatcaacaccctaatccagaa
gatgtggttcaagaagtacaaaggagactaaatgtgtcgatttacagaagagatatgctg
gataccggcggcggatgtctcaccggaaatccaatcgacgattgctggcgttgcgaccca
aactgggcgaacaaacgccagcgtctcgctgactgcgccattgggttcggaaaagcagca
ttaggcggcaaaggcggccagatctacgttgtcaccgactcctccgaccacgacgtcgtc
agcccaactccgggcaccctccgctacggcgtcttacaaaccgaacccctctggatcatc
ttctcatccaacatggtcatcaagctcaaacacgaactcatcgtcaacagctacaaaacc
atcgacggccgtggtgccaacgtggcaatcaccggcggcggatgtattaccctccagtac
gtcagcaacgtcatcatccacaatatacgcgtctacgactgtaagccatcgggaaacacc
aacatccgatcaagtccgacccatgttggatttaggggcaaatcggacggtgacggaata
tccatcgccggatcaagaaacctatggatcgatcattgctctctttcacactgtaccgat
ggcttaattgacgctgtattggggtccaccgccattaccatttcaaacagctacttcact
catcataatgaagttatgcttatggggcatgacgatggttacatgcctgacaaagggatg
caggttacatttgcatttaatcattttgggagaggtttgatacagagaatgccaaggtgt
agacatggctatttccatgtggtcaacaacgatttcactgaatggaagatgtacgccatc
ggcggcagcgccaacccgaccatcaatagtcagggcaaccgctacattgcgccgccagag
gccgacgccaaagaggtgacgaagcgagtggacacggatgaggggaactgggcgggatgg
aactggaggacggatggtgatataatggtaaatggtgcattttttgtgccctcgggtgag
ggcatgagcaccacgtatgcgaacgcggccagctacgagccaaagtcggccgccctcgtc
acgcaactgacgatgaacgccggcgtctttggggggcccagggatgatgacgggagcgag
tcattcagcgatgggacggttaccggagatagcgcaagcgggaacaccggaagaggcggt
ggtggtggtgatgatggcgattactttgggatgatatttggcgggggctcggtggcaaca
tcaccgccttcgacgatcgtcatttttgttgttttagttttatacattattagcaccaca
aataatggtggtggtttatttccattattattattattattatag
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