Cynara cardunculus var. scolymus (artichoke): 112513247
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Entry
112513247 CDS
T05604
Name
(RefSeq) pre-mRNA-splicing factor syf2
KO
K12868
pre-mRNA-splicing factor SYF2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112513247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112513247
Spliceosome [BR:
ccav03041
]
Complex B
Other components
Prp19-related factors
112513247
Complex C
112513247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYF2
Motif
Other DBs
NCBI-GeneID:
112513247
NCBI-ProteinID:
XP_024975225
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All DBs
Position
LG 5:complement(31085851..31090188)
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AA seq
311 aa
AA seq
DB search
MVTEGRGVHPDCRNSSNPYHECSEYCFKVIAEAMKLASKNEPAGLQASTRSFQQTSAATS
VQTEHPDDEQSDHDDHPSGDDNNASEDQPVVDFTKLTGKQKKLFEIRLKMNEARKANQTA
MVAEKKRMEAPQESRGISKQKWIEERKKKIGKLLDANGLDMTKAYMLDTQQMAETKYKKW
EKEPAPAGWDVFNQKTLYDAYKKRTKNIDVDLEEYNKMKEADPEFYREASSLQYGKAPKI
SEDKIEKMVKELKDRDEKRNTFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGRYTLEIK
NNLERGTALPD
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgaaggaagaggagtacatccagattgcagaaattcttcaaacccataccat
gaatgtagtgaatattgtttcaaagttattgctgaggccatgaaattggctagtaaaaat
gaaccagctggcttgcaagcttctactagaagttttcaacagacttcagctgcgacatct
gttcaaactgaacatcctgatgatgaacaaagtgatcatgatgatcatccaagtggtgac
gacaacaatgcctctgaggatcaaccggtagtggacttcactaagcttacagggaagcaa
aagaaattgtttgaaataaggctaaagatgaacgaggcaaggaaagccaatcaaactgcc
atggtggcagaaaagaaaagaatggaagctccacaagagtcgagaggaatttctaaacaa
aagtggatcgaggagaggaagaaaaaaatcggcaaacttctggatgctaatgggttggat
atgacaaaggcatacatgttggatacacagcagatggctgagacaaagtacaaaaagtgg
gagaaggaacctgctccggccggttgggatgtttttaatcagaaaacgttgtatgatgca
tacaagaaaaggacgaaaaacattgatgttgatcttgaagaatacaataaaatgaaggaa
gcggatccagagttctaccgagaagcttcaagtttgcaatatgggaaagcaccaaagatt
tcggaggataagattgaaaagatggtgaaggagctgaaggacagagatgagaaacggaat
acgtttagtaggagaagaaggtttcacgaagagaaggacattgactcgatcaacgaccgt
aacgagcatttcaataagaagatcgaacgggctttcggtcgatacacattggagattaag
aacaatcttgagagaggaactgctttgcctgattag
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