Cynara cardunculus var. scolymus (artichoke): 112513365
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Entry
112513365 CDS
T05604
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112513365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112513365
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112513365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
DUF3856
H-kinase_dim
Motif
Other DBs
NCBI-GeneID:
112513365
NCBI-ProteinID:
XP_024975369
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All DBs
Position
LG 5:complement(35064458..35076533)
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AA seq
936 aa
AA seq
DB search
MDGDLQEYNKLPELKLDAKQAQGFLTFFKKLPNDTKAVRFFDRRDYFTAHGENASFIAKT
YYHTTTALRQIGSGSDAVSSVSVSKNMFETIVRDLLLERTDHSLELYEGSGSNWRLMKRG
TPGNLGSFEDVLFANNDMQDSPVIVALVPNFRETGCTVGLGYVDLAKRVLGMAEFLDDSH
FTSAESALVALGCKECLLPTELTKSSECKALYDAISRCGAMVTERKKAEFKGRDLAQDLG
RLVKGSSEPVRDLASAFEFAPGALGVLLSYAELLADENNYGNYTISQYNLNSYMRLDSAA
IRALNVMESKTDANKNFSLFGLMNRTCTAGMGRRLLHMWLKQPLLDVTEINVRLDLVQTF
VEDPAFRQDLRQHLKRISDIERLMRSIEKRRASLFHIVKLYQSSIRLPFIKSAMERYDGQ
FASLVKGRYTDHLNYWTNDDHLNKFIGLVEVAVDLDQLENGEYMISPGYDSQLSTLKNEQ
ESVEQQIHDLHEQTAKDLDLPLDKGLKLDKGTQFGHVFRITKKEEPKVRQKLNTLFIVLE
TRKDGVKFTNTKLKKLGDQYQKILEEYKNCQKELVARVVETAATFSEVFEGLAMLLSELD
VLLSFADLAASSPTPYARPEITKSDTGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGIS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHENAGKPSGVANYHVSAHIDSSSQKLTMLYKVEPGACDQSFGIHVAEFANFP
ESVVSLAREKAAELEDFSPLSIVSNEPEEEVGCKRKKPSEPDDMALGAPRARQFLKDFSE
LPLDKMDLKQALQEVKRLKNELQDDASNCKWLQQFL
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggatggagatttacaggaatacaacaagcttcctgagctcaaattagatgctaaacaa
gctcaagggtttctcacgttcttcaagaaattacctaatgacacgaaggccgttcggttt
tttgatcgacgggattatttcaccgctcatggtgagaatgcttcttttattgcaaaaaca
tattaccacacaacaacagccttaagacaaatcggtagtggatctgatgctgtgtctagt
gtaagtgtaagcaaaaatatgtttgagacaattgtccgtgatctactcttagagagaact
gatcatagtcttgagctatatgagggcagtggctcaaactggagattaatgaaaagggga
actcctggtaatctcggcagcttcgaagatgttctgtttgcgaacaatgatatgcaggac
tctccggtgattgttgctctagttccaaacttccgtgaaactgggtgcactgttggtttg
ggttatgttgatctcgctaagagggtgcttggaatggctgaatttcttgatgatagccac
tttacaagcgctgaatctgctctagttgctctcggctgcaaagaatgtcttttgcctacc
gaacttaccaaatcaagtgagtgtaaagccctgtacgatgcaatttcaagatgtggtgca
atggtaactgaaagaaagaaagccgagttcaaaggaagagatttggcacaggatcttggt
aggcttgtcaaaggttctagtgaaccagttcgtgatctagcttcagcatttgaatttgca
cctggggctttaggcgtgttactgtcctatgctgagttacttgctgatgaaaataattat
gggaattatactatcagccagtacaatcttaatagctacatgagattagactctgctgct
ataagggcactgaatgtcatggagagtaaaacggatgccaacaaaaattttagcctgttt
ggtctcatgaatagaacttgtactgcaggcatgggcagaaggctactacacatgtggtta
aagcaacctttgttggatgtgacagagataaatgtacgattagacttggtgcaaactttt
gtggaggatcctgctttccgtcaggacctgaggcagcacttgaaaaggatatctgatatt
gaacgattgatgcgcagtattgagaagcgaagagctagtttgttccacattgtcaagctt
tatcagtcaagcatcagacttccattcattaaaagtgcaatggaacggtacgatggtcaa
tttgcatctttagttaagggaagatatacagatcatctaaattattggactaatgatgat
cacctgaataagtttattggtcttgtggaagttgctgttgatcttgatcaacttgagaat
ggagaatacatgatttcacctggatatgactcccagttgtcaaccctgaaaaatgagcaa
gagtcagtagaacaacaaatacacgatttgcatgaacaaactgctaaagatcttgatctg
cctcttgacaagggtttaaagctagataagggtacgcaatttggacatgtttttagaatc
acaaagaaggaagaaccaaaagtaaggcagaagctcaataccctttttattgttcttgaa
actcggaaggatggtgtaaaatttacaaatactaagctgaagaaattaggagaccaatac
cagaagatactggaggaatataagaactgtcagaaggagctggtagcccgagttgttgaa
accgcagctaccttctctgaggtgttcgagggcttggctatgttgctctcagagctcgat
gtcttgcttagttttgctgatctggctgctagcagccctaccccttatgcaagaccagaa
atcacaaaatcggatacaggagatattatattagaaggcagtagacacccttgtgtggaa
gctcaagactgggtgaattttataccaaatgactgcaaacttgttaggggaaagagctgg
tttcaaattatcacagggcctaacatgggtggaaaatccacatttatacgtcaggttggt
gtgaacattcttatggctcaagtgggttcctttgttccttgcgataaagctagcatttct
atccgtgactgtatttttgctcgtgtcggtgctggtgactgtcagttacgtggaatatct
acctttatgcaagaaatgctggagacagcatcaattttgaaaggtgctactgataagtcg
ctgatcattattgatgagttgggccgtggaacatcgacttatgatggatttggtttagct
tgggccatttgtgagcacttggttgaagtgattaaagcacctactttgtttgctactcac
tttcatgagttgactgcattagctcatgaaaatgctggtaagccttccggtgtagctaat
tatcacgtcagcgcacacatcgactcatcaagccagaagctaacaatgctttacaaggtt
gaacctggggcttgtgatcaaagttttggcatccatgtagcagagtttgctaactttccc
gaaagtgtcgtctctcttgctagagaaaaagctgctgagttggaggatttctcgcctctt
tcaattgtatcaaatgagcctgaggaagaggtgggttgtaagcgaaagaaaccatccgaa
ccagatgatatggcgttaggtgctcctcgggctcgccagtttttaaaagacttctctgag
ttgccacttgacaaaatggacttaaagcaggctttgcaagaagtgaaaaggttaaagaat
gagttgcaggatgatgccagcaactgtaaatggctccagcagtttctttag
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