Cynara cardunculus var. scolymus (artichoke): 112513460
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Entry
112513460 CDS
T05604
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112513460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112513460
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112513460
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_8
Motif
Other DBs
NCBI-GeneID:
112513460
NCBI-ProteinID:
XP_024975502
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Position
LG 5:339959..344165
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AA seq
585 aa
AA seq
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MGCSFPEEVLEHVFSFITSHKDRNVVSLVCKSWYEIERWCRRRIFVGNCYAVSPKIMIRR
FPEVRSVELKGKPHFADFNLVPEGWGGYFYPWISEMSRAYPWLEEIKLKRMVVSDESLEL
ISKSFKNFKVLILSSCEGFSTDGLAAIAANCRNLRELDLRESEVEDLSGHWLSHFPDSYT
SLESLNMACLSSEVSFSALQRLVARSPNLKTLRLNQAVPLEKLSTLLRRAPQLVEMGTGA
YSAELRSDLYSGLAEAFSRCKELKGLSGFWDVVPSYLPAFYSVCSRLTSLNLSYATIRSP
DVTKIVSQCPNLQRLWVLDYIEDSGLNAVSLSCKDLRELRVFPSDPFGADANVSLTEQGL
VXVSKGCSKLQSVLYFCRQMSNSALITIARNRPNLTCFRLCILEPRAPDYLTLEPLDAGF
GAIVKHCKGLQRLSLSGLLTDCVFEYIGTRAKRLEMLSIAFAGDSDLGLHYVLSGCDSLQ
KLEIRDCPFGDKALLANVSKLETMRSLWMSSCXVSLGACKLLSQKMPRLNVEVIDEKGDL
DLIPDNCPVEKLYIYRSVAGPRFDMPSFIRIMDHDPAYKDIPSMH
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggggtgttcgtttccggaggaggtgttggagcatgttttctcgttcataacctctcat
aaagacaggaatgttgtttcattggtgtgtaagtcgtggtacgagatcgagaggtggtgc
cggaggaggatttttgttggaaactgttacgctgtgagtccgaagatcatgatcaggagg
tttcctgaagtgagatctgtggagttgaaagggaaaccgcattttgcggacttcaatttg
gttcctgagggttggggaggttatttttacccttggatctctgaaatgtctagggcttac
ccgtggttagaggagattaagcttaagcggatggtggtttcagatgagagcttggagttg
atctctaagtcttttaagaactttaaggttttgattttgtcttcttgtgagggattcagc
accgatggactcgctgccatagccgccaattgcagaaatctgagagaactggatttgcgg
gagagcgaggtggaggatcttagtggtcattggttaagtcatttccctgattcktatacc
tcattggagtctcttaacatggcttgtttgagttctgaggtgagtttctcggccctccaa
cgcctggttgctcgctcacccaacctcaagactcttcgactcaatcaggctgttcccctt
gagaagctctccaccctcctacgccgggccccacagcttgttgaaatgggtaccggtgct
tattctgcagaactgcggtctgatttatattcaggtttagctgaggctttctcgagatgc
aaggagcttaagggcctttccggcttttgggatgtggttccatcttatcttcctgctttt
tattcagtttgttctaggctcacttccttaaacttaagctatgcgactatccgaagccct
gatgtaaccaagatcgtcagtcagtgtcctaatctgcagcgtctatgggtactggactac
attgaggattccgggctcaatgctgtttcattgtcctgtaaggacttgcgggaattgagg
gttttcccttctgacccatttggtgctgatgcaaatgtatcattaacggaacaaggcctg
gttrcggtttccaaggggtgctccaagctccagtctgttctttacttctgtcgccagatg
tcaaattctgcattgatcacgattgctaggaaccgtcctaacctaacctgcttccggcta
tgcattctcgaaccacgagctcctgattaycttactctcgaaccactagatgctggtttt
ggagccatagtaaagcactgcaaagggcttcaacgtctatcgttatctgggctcctcaca
gattgtgtgttcgagtacattgggacacgggctaagagattagagatgctttctatagcg
tttgccggggatagcgacttagggctacattatgtgttgtcagggtgtgacagcctmcag
aaacttgagattcgagattgcccttttggggacaaggctctgttggctaacgtttccaag
ctggagacaatgcgatccctttggatgtcttcatgckcggttagtttgggagcatgtaag
ctgttaagccagaagatgcctcggcttaaygttgaagttatagatgaaaagggagactta
gatttgattcctgataactgtccggttgagaaactttacatataccgttcggttgcaggg
ccacggttcgacatgccgagctttatacggatcatggatcatgaccctgcatataaagac
atcccatccatgcactga
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