Cynara cardunculus var. scolymus (artichoke): 112513623
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Entry
112513623 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112513623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112513623
03009 Ribosome biogenesis [BR:
ccav03009
]
112513623
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112513623
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112513623
Complex B
112513623
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112513623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
DUF4436
Motif
Other DBs
NCBI-GeneID:
112513623
NCBI-ProteinID:
XP_024975714
LinkDB
All DBs
Position
LG 5:complement(3856082..3869111)
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AA seq
559 aa
AA seq
DB search
MSYVPPHLRKSIAATATTTTVSTTATSTTLDNNTSNHKLNSKSINNAFSNAAPRRSSANN
HIQPLRGLAVPNVVFPQWKPSERVLRLKPEQIEEVRLRLNVDVTVTPDSPPAPAPIESFT
DMCLASSIMKDIAIHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCI
AQPSVRRGDGPLALVLAPTRELAQQIEKEVKAFSQSLESFRTAIVVGGTNIADQRSELRA
GVDIVVATPGRFIDHLQQGNTSLTRISYVVLDEADRMLDMGFEPQIREVMHNLPEKHQTL
LFSATMPVEIEALAQEYLTNPVQVKVGKVSSPTENVSQTLEKISESEKIDRLLSLLVEEA
ALAEKLGHPFPLTIVFVERKTRCDEVAEALVAQGLNAVALHGGRTQSEREGALRDFRHGP
TNILVATDVASRGLDVTGVAHVVNLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMF
LVSQIRKAIADVQSGNTVAFATGKVARRKEREAAAAQKEARIAQSKLPPTSINVEDKYKY
MIATEMIKKEGAADDAWDD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtgcctcctcacctccgtaagtcaatcgccgccaccgccacaaccaccacc
gtctccacaaccgccacctccacaaccctagacaacaacacctccaaccacaagctcaac
tctaaatccattaacaatgccttttccaatgcagcgcctcgacggagctcagccaacaac
cacatccaaccgttgagaggcctcgctgttcctaacgtagtgtttcctcaatggaagcct
tccgaacgcgttctacgtcttaaacccgagcagatagaagaggtcagattacgactcaat
gttgatgtaacagtcactcctgactctccccctgcacctgcaccaatcgaatcttttacg
gacatgtgcctggcctcaagcatcatgaaggatattgccattcatgaatacacaacgcct
acttctattcaggcccaagcaatgcctgttgctctaagtggaagagatcttttaggctgt
gcagaaacaggcagtggcaaaacggctgctttcacaatacccatgatacagcattgtata
gctcagccttctgttcgtcgcggggatggtccattagcactagtgctggctcccaccaga
gagcttgcgcagcagatagagaaagaggtgaaggcattcagtcaatcattggagtctttt
agaactgcaattgttgtcggaggaacaaacattgctgatcagaggtccgagcttcgggca
ggagtagatattgtggttgctactcctggaagatttattgatcatttacagcaaggaaac
acgtctctcacacgaatttcatatgttgtcctggatgaagcagatagaatgcttgatatg
ggttttgaacctcaaataagagaggtaatgcataatcttccagaaaagcatcaaacactg
ttgttcagtgcaaccatgccagtggagattgaagcactagcacaggaatatttgacaaat
ccagtacaagtcaaggttggaaaagtgagcagcccaacagagaatgtatcccaaactttg
gagaaaatatccgaaagtgagaagattgatcggctgctatctttgcttgttgaggaggct
gcactggctgaaaaactaggccacccatttcctttaacaattgtatttgtggaacggaag
acaaggtgtgatgaagttgctgaagctttggtagctcagggtttaaatgctgttgctctt
catggaggccgtactcagagtgaaagagagggtgccctgcgtgatttcagacatggtccg
accaatattttggttgctactgatgttgcctctcggggtctagatgttacaggagttgct
catgtagttaacctggaccttccaaagaccatggaggactacgtgcaccgaattggaagg
acaggccgtgcaggatcaacaggccgagctacttcattttataccgaccgtgatatgttc
cttgtatcgcaaataaggaaagcaatagcagatgttcaatctgggaacaccgtagctttt
gccaccggcaaggtggctcggaggaaggagcgagaagcagcagctgcacagaaagaggcg
aggatcgcacaatcaaagctccctccgacgtcaataaacgtggaagacaagtacaagtac
atgattgccactgagatgatcaagaaagaaggtgctgctgatgatgcttgggacgattaa
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