Cynara cardunculus var. scolymus (artichoke): 112513735
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Entry
112513735 CDS
T05604
Name
(RefSeq) ubiquitin domain-containing protein DSK2a-like isoform X1
KO
K04523
ubiquilin
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112513735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112513735
03051 Proteasome [BR:
ccav03051
]
112513735
Membrane trafficking [BR:
ccav04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
112513735
Proteasome [BR:
ccav03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
112513735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
Rad60-SLD
UBA
STI1-HOP_DP
Ubiquitin_2
XPC-binding
UBA_7
Rad60-SLD_2
Dsc3_N
UBA_HOIP
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
112513735
NCBI-ProteinID:
XP_024975859
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Position
LG 1:17468472..17478529
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AA seq
558 aa
AA seq
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MGGGGGDGAGAGAVTEGIESNKAEGGETVTVNVRCSNGTKFSVQVTLESSVESFKSVLEQ
NCDIPAAQQRLIYKGRILKDDQTLKSYGLEAEHTVHLVRGFVPATSTPAGVTPTRANTTT
PVAREVGSVEGGAIGAGIGASPFPGLGLSGLGGNGGMFGAGLPELEQMQQQLTQNPNMMR
EIMDLPLVQNLLNNPDVMRNMMMNNPQMREIIDRNPELAHMLNDPAILRQTMEAARNPEL
MREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGGDTRNELNSNPFAALL
GAQGGPVREQVANPTTTGVEATTGSPAPNTNPLPNPWTAGGAGANQTNASATNPAGTGRS
PPVGGLGGLGAPGLEGLFGTTPDPNSMSQLMQNPAISQMMQSLLSNPQYMNQILGLNPQM
RNMLESNPQLREMMQNPDFVRQLTSPETMQQMMTLQQSLFSQLGRQPPTREAGQTGAGTA
GAPDMGLDMLMNMFGGLGAGGFATPNNSNVPPEELYATQLAQLQEMGFFDTRENLQALTA
TAGNVHAAVERLLGNLGH
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcggaggcggtgatggtgctggtgctggtgctgtgaccgaaggtattgaatcc
aacaaggctgaaggtggtgaaaccgttaccgttaacgtacggtgttcaaacggcacgaaa
ttctccgttcaggtgacccttgagtcgtcggttgagtcgttcaagtctgttctggaacag
aactgtgacatccccgcggcacaacaacgattgatttataaaggccgtattctcaaggac
gatcagactcttaagagctacggtttggaggctgagcacactgttcacctagtacgtggt
tttgtgcctgctacatccactccagcaggtgttacccctaccagagcaaatactactact
cctgttgcaagggaagttggctcggttgaagggggggcaataggtgctgggattggtgct
tcaccatttcctggacttggtttgagtggtttgggaggcaatggtggcatgtttggagct
ggacttccagaattggaacaaatgcagcaacagttgactcagaaccccaacatgatgcga
gaaatcatggatctgcctcttgttcagaatttattgaacaacccagatgttatgcgtaac
atgatgatgaataatccccaaatgcgtgaaatcattgataggaatccagagcttgctcat
atgctaaatgatcctgcaatcctccgtcaaacaatggaggctgcaagaaatcctgaactc
atgcgtgaaatgatgcgtaacacagacagagcaatgagtaatattgaatcttctcctgaa
ggatttaacatgcttaggcggatgtatgaaaatgtccaggagccttttctgaatgcaacc
acaatgggaggtggtgatacaaggaatgaattgaactcaaatccgtttgcagctcttttg
ggtgcccagggggggccagtccgtgaacaggtggctaaccctacaaccactggtgtcgag
gcaactactggttctcctgctccaaataccaatccacttcccaatccttggactgctggt
ggtgctggagctaaccaaacaaatgccagtgcaacaaatcctgctgggactggtaggtcc
ccaccagttggtggtttaggaggacttggtgctccaggtcttgagggattgtttggtacc
actcctgatcccaattcaatgagccagcttatgcaaaatccagctatttcacagatgatg
caaagtctcctttcaaacccacaatatatgaaccagatacttggtctcaatccacagatg
cgaaacatgcttgaatcgaacccccaattaagagagatgatgcaaaatcccgacttcgtt
cgccaattaacttctccagagactatgcagcaaatgatgacactgcagcaatctctattc
tctcaacttggtcggcaaccacccacccgggaggcaggtcaaactggtgcagggacagca
ggtgcccctgacatgggattggatatgcttatgaacatgtttggcgggcttggagctggc
ggctttgcaacacctaacaattcaaacgttcccccggaagaactgtatgctacacaactc
gcacaactacaagaaatggggttctttgatactcgcgagaatcttcaagcgctgacagcc
accgcaggtaatgttcatgccgcggttgagcggttattgggaaatcttggtcactag
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