Cynara cardunculus var. scolymus (artichoke): 112513752
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Entry
112513752 CDS
T05604
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112513752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112513752
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112513752
Spliceosome [BR:
ccav03041
]
Complex C
Other components
Step II factors
112513752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
KH_DEAH11_1st
KH_DEAH11_2nd
RRM_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
HA2_C
AAA_22
AAA_19
IBR_1
zf-C3HC4
ABC_tran
Helicase_RecD
ResIII
AAA_29
HA2_N
T2SSE
Motif
Other DBs
NCBI-GeneID:
112513752
NCBI-ProteinID:
XP_024975874
LinkDB
All DBs
Position
LG 5:complement(20346004..20352281)
Genome browser
AA seq
1733 aa
AA seq
DB search
MSSDQLSPMYRNRASFGMKHRFFDQPHHHRRRDRPQGSPLSCTSTTHRRPNFVIELRAQN
KDHNSYNRHEIVSLMGIFKCGPDDFFIYEKGEVAARFFYQQWSNALETVVYLWDVLLNGG
LSFTPRLVRNLNVPSDTDELYSRLRVLFSDRIREFMKGELVIKWERKLEEVTNEIAKLDV
LLKKPKRVSIHSELYKKKEGHVRERTLIDRRIREFKTGMECILDYVNGKVFDTCVVKVLM
LKDNLDWSKIYWLMKRECRRLDDGLPIYADRKDILWQIYRQQIMVLIGETGSGKSTQLVQ
FLTDSGVAANKSIVCTQPRKLAAMSLANRVQEESRGCCQDNSVICSSTYSSFQPFNSKVV
YMTDHCLLQHYMNDTNFSWISCIIVDEAHERSLNTDLLLALVKKLLHRRSDLKLIIMSAT
ADAEQLAKYFDGCGTYHVVGRTFPVDIRYDPGISDASCDSRFVAPYVTDLMRRVGEIHRM
EGEGTILAFLTSQMEVEWACEQFKAPSAIALPLHGKLSHEEQYRVYLNYPEKRKVIFSTN
LAETSLTIPGVKFVVDSGMVKESRFEPSTGMNVLRICRISKSSANQRAGRAGRTEPGKCY
RLYGESDFRSMPAHQEPEIRRVNLGIAVLRILALGIHDIEGFDFIDAPSNSAIQTAIRSL
IQLGAVKLENGVYKLTKDGRNMVKLAIEPRLGKMILKSFENRLGREGVVLAAVMANSSSI
FCRVGKEEDKQKSDCLKVQFCHRNGDLFTLLAVYRKWEQVPSDKRNQWCWDNSINAKSMR
RCQEAVHEMESCLEHELNIIIPTYWHWTPEVYAESDKILKNVILSALAENVAMYTGNDSL
GYEVASTGSCVQLHPACSLLIFGERPSWVVFGEIIAMPNQYLVCVTSIDFESLHTLSPLP
FDISQINSRKLQSKVLTGFGSTLLKKFCGKSNSGMKQLLSHIKDAIKDNRIGLEVSFDHN
EVNLFASSEHMGQVSDFVNAALERDGKWLRNECLEKCLYPDRHTLPPVALVGAGAEIKHL
ELERRCLTVDIFLNGPNDVEEKELLSFLENHTAGNICGFHKFGGTSQDTDKNEKWGRVTF
LTSDAAERATKLSQFDFKGASLRVVPSRNTFGGESKFSSFPAVKAKVSWPRRPNRGYAFV
KCGSGDDALAMVKDFSDVVIGGKPIRCKQSMKDVDSVMLTGIDLDIFETELFDALSSLTS
RKIVDVSLPRGNAAEQPSVINLEEALLREISSFMPGGNSKNECVRVHIFPPEKFDYLMKA
EISFDGSLHLEAARALEQIDGKTLPGCLAWQKIKCQQQFHSSVFCPAPVYMVIKEQLHSL
LRNLKLRKVAEFFFERNENGSVRVKISAKATKIMAESRRPLEQLMNGRTIIDARLTPPVL
QLTFSREGFSVQKSIQRETGTFFLFDRHNHSFRVFGPLNKLDIAHQRLVQSLVALYESKQ
LDVHLRGATFPPDLMKKVVEKFGPNLHGLKERFPGSEFTLNTRHHIIAIRGSKELKQNVE
EMINEIAKSSAYPSKKVEGQTASCPICLCDVEDGYTLEGCNHEFCRMCLVDQCESAIKSH
DGFPMRCAHEGCNAMILLVDLKSLLLAEKMDELFKASLGHFVGCSGGKYRFCPSPDCPSI
YAVAEDGDSGRPFTCGACSVETCTRCHLEYHPFLTCERYMEFKRDPDSSLKEWMKGKEEV
KKCPVCGWTIEKFDGCNHVECRCGRHICWVCLEHYKSSEECYGHLRNIHGAIV
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgatcaactctctcctatgtacaggaacagagcctcttttgggatgaaacac
cggttttttgaccagccgcaccaccaccggagacgagatcgaccacaaggttcaccactg
tcctgcaccagcaccacccatcgtagacccaatttcgtaatcgaacttcgggctcagaac
aaagatcacaacagctataatcgtcatgaaatcgtatctttgatggggatattcaagtgc
ggccctgacgatttttttatttacgaaaagggtgaagttgcagctaggtttttctaccag
cagtggtctaatgcgcttgaaacggttgtctatttgtgggatgttttattgaacggaggt
ctctcctttacgccgaggcttgtacggaacttgaatgttccttctgatacggatgagtta
tattcgcggcttagggttttgtttagcgaccgaataagagagtttatgaaaggggagttg
gtgataaaatgggagaggaagcttgaggaagttaccaatgaaattgctaagctggatgtg
ttgctaaagaagcccaagagagtatcgatacatagtgagttatataagaagaaggaaggg
catgtacgtgagagaactttgattgataggaggattagagagtttaagactggaatggag
tgtattcttgattatgtcaatgggaaggtgtttgacacttgtgttgttaaggtgttaatg
ttgaaagataatcttgattggagcaagatttactggttgatgaagagggaatgcaggaga
cttgatgatgggttgcctatatatgctgatcggaaggacattctttggcagatttaccgt
cagcagataatggtgttgattggagagactggttcgggaaaaagtacacagctggttcag
ttccttactgattcaggagtggctgctaacaagtctatagtttgcactcagcctcgcaag
cttgctgccatgtcattggcaaatagggttcaggaagaaagccgtggttgctgccaggat
aattcagttatttgttcttcaacatactcatcttttcagccatttaactcgaaggtggta
tatatgacagatcactgcttacttcagcactacatgaatgataccaatttttcgtggatt
tcttgcatcattgttgatgaggctcatgaaagaagcctaaacaccgatcttcttttagca
ttggttaagaagttacttcatcggaggtctgatctgaagcttattataatgtctgcaaca
gctgatgcagaacagttggcgaaatattttgatggctgtggtacgtatcatgtggtgggt
agaactttcccagttgatattagatacgatcctggtatatccgatgcttcttgtgattct
cgttttgttgcaccttatgttactgatttgatgaggagggtgggggagatccatagaatg
gagggagaagggacgatccttgctttcttgacttctcaaatggaggtagaatgggcttgt
gaacagtttaaagctccatcagctattgcattgcctttgcatggaaaattgtctcatgag
gagcaataccgtgtgtatctgaattatcccgagaagagaaaagtcatattttctactaat
cttgctgagacatcgctaacaataccgggagtcaagtttgtagttgattctggcatggtt
aaggagagtaggtttgaacccagcactggcatgaatgttcttagaatttgcaggattagc
aaaagttctgctaatcaacgtgctgggcgtgctggaagaactgagcccggaaagtgttat
aggctctatggagagagcgatttcagatctatgcctgctcatcaggaacctgaaatacgt
agggttaatcttggtattgcagtcctcaggattctagctctgggtattcatgacatcgag
ggttttgatttcattgatgcgcctagcaattcagctatccagactgcaatcaggagtctt
atccagttgggtgccgttaaactggaaaatggtgtttacaagttaaccaaagatggtagg
aatatggtgaagctagcaatcgagcctaggcttggtaaaatgattttgaaaagttttgaa
aacaggttgggcagggagggggttgttcttgctgcggttatggcaaattctagcagcata
ttttgcagagttggcaaagaggaagacaagcaaaaatccgattgcctgaaggtgcaattc
tgtcatcgcaatggcgatttattcactttgctggctgtttaccggaaatgggagcaagtt
cctagtgataagagaaatcaatggtgttgggataatagcataaatgcaaaatccatgcgc
agatgccaagaagcagtgcacgaaatggaaagttgtcttgaacacgagcttaatatcatt
atccccacttactggcattggactccagaagtgtatgctgaatctgataaaattttaaaa
aatgtcatactctctgctttagccgaaaacgtagcaatgtacactggaaacgacagtctc
ggttatgaagtggcgtcaacaggaagttgcgttcagttgcatcctgcatgttctttactc
atctttggtgaaagaccaagttgggtggtctttggggaaattattgcaatgcccaatcag
tacttggtctgtgttacttccattgactttgagtcattgcatactctttccccccttcca
tttgatatttcacagatcaacagtcggaaactgcaatcaaaggttttaacaggtttcgga
agtacattactgaaaaagttttgtgggaaatccaactctggcatgaaacaacttctttcc
cacatcaaggatgccatcaaagataaccgaattgggcttgaagtttcttttgatcataat
gaagttaacttatttgcatcatccgaacacatgggacaggtctctgattttgtaaatgct
gcattggagcgtgatggaaagtggttacggaatgaatgcctggagaaatgtctgtacccc
gacaggcatacattgcctcctgtagctcttgttggtgctggtgctgaaataaagcatctg
gaactggaaagaagatgtcttacggttgatatatttcttaatggtccaaatgatgttgaa
gagaaggaacttctctcttttttggagaaccatacagctggcaacatttgtggctttcat
aagtttggtgggaccagtcaagataccgataaaaatgaaaagtggggccgggtaacgttt
cttacatccgatgctgctgagagagctacaaaattgagtcaatttgacttcaaaggcgcg
tctctgagagttgttccgtcaagaaacacatttggtggagaaagcaaattttcatcattt
cctgctgtcaaagcaaaagtgtcgtggccccgcaggcccaataggggatacgctttcgtt
aagtgtggaagtggagatgatgctttggccatggttaaggacttttcagatgtggtaatc
ggggggaagcctatacgctgcaaacagagcatgaaggatgtggacagtgttatgttgact
ggaatcgacttagatatatttgaaaccgagctttttgatgcattaagttctttaaccagt
aggaaaattgtggatgtgagccttcccagaggcaacgccgcagaacaaccctcagttatc
aatcttgaagaagcacttttgagagaaatcagttcattcatgcctggagggaattccaaa
aatgaatgtgttcgtgttcatatcttccctcccgaaaaatttgattacttaatgaaagct
gaaattagtttcgatggaagtttgcatttggaggcggcaagagctttggaacagatcgat
gggaaaacattgcccggatgtttagcatggcagaagataaaatgtcagcagcagtttcat
agcagtgttttctgccctgcacctgtttatatggttatcaaggagcaattgcattcttta
ctcagaaacctcaagcttcggaaagtagccgagttcttttttgaacggaacgagaatggt
tcagttcgtgtcaaaatatctgcaaaagctacgaaaataatggcagagtcgaggaggcct
ttggagcaacttatgaacggaaggaccataattgatgctcgcctcactccaccagtttta
caacttaccttttcacgagaaggattcagtgttcagaaatctattcaacgtgaaacaggt
acttttttcctcttcgacaggcataaccatagcttcagagtttttggtccgttaaataag
ctcgatattgcacatcagagattggttcagtcccttgttgcactttatgaaagcaagcaa
cttgatgttcatcttagaggagccactttcccacctgatctaatgaagaaggtggtcgaa
aagtttgggcccaatcttcacgggctcaaggaaagattccctggatcagagttcacgctg
aacactcggcatcatatcatagccattcgtggtagtaaagaattgaagcaaaacgttgaa
gaaatgataaatgagatcgcaaagagcagtgcttatcctagtaaaaaagtggaaggtcag
actgcctcctgtcccatatgtctgtgtgacgtcgaggatggttacaccctcgaagggtgt
aaccacgagttctgccggatgtgtttagtggatcaatgcgaatccgccatcaagagccac
gatggttttccaatgcggtgtgcccacgagggttgtaacgcgatgattttactggtggac
ctcaaatcgctattattagcagagaaaatggacgaacttttcaaagcatctttggggcat
tttgtgggatgtagcggtgggaagtatcggttttgcccgtcacccgactgtccatcgatt
tacgcggtggcagaagacggggattctgggcggccgtttacatgtggggcatgttctgtg
gaaacgtgtactcgatgccacctggagtaccatccgtttctgacgtgtgaaagatatatg
gagtttaagcgggacccagattcgtcgttgaaagagtggatgaaggggaaggaagaggtg
aagaaatgtccggtttgtgggtggacgatcgagaagtttgatgggtgcaaccatgtggag
tgcaggtgcgggcgacacatttgctgggtgtgccttgagcattataagagcagtgaagag
tgctatggccatttgaggaacatacatggtgcaatcgtttaa
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integrated database retrieval system
