Cynara cardunculus var. scolymus (artichoke): 112513987
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Entry
112513987 CDS
T05604
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112513987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112513987
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112513987
Complex B
112513987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Crust_neurohorm
Motif
Other DBs
NCBI-GeneID:
112513987
NCBI-ProteinID:
XP_024976014
LinkDB
All DBs
Position
LG 6:1773523..1802818
Genome browser
AA seq
969 aa
AA seq
DB search
MSNNPQNSGAQFWPLFPAQQGQPFMQLASGSQQFRPLGQGMPPGQSQLPQFSQPLQQMSA
WPVRPIHTTPSLASPMPFMQPNMTSTSCSPQFQSSATTNNHVSGLGGPGVHLSSSFTFST
SAFGHAQNNASPQFQPVSQMRTPVAPFGGQHWLPFGTQGAPTVTPVAQTGMQHVTVAFTN
QAMSVPNVIQEASSDWQEYTSGDGRRYFYNKRTKNTSWEKPSELMTPLERVDASTVWKEF
TTAEGKKYYYNKETKQSKWKIPDELELAREQAEKEASEGSQSGMVPQADAPATFTSSTLE
QPFASTSSVEDVSLTISGVASSPVAVKPNTSVGNDPPNLGIDSSSIASEGMETPSPVSQA
VNGAPYVLVNTSSSPKTNLENSYSHAVANALDGALVQDIKEAKKGISAAGKVNAAQWEVV
DVEPVLYASKQEAKIAFKSLLESANLEADCSWEQAMRVIINDKRYGVLKTLGERKRAFNE
FLMEKKKLDVEESRLRQKKAKDEFMKMLEECKELTSSMRWSKAIALVEDDKRYKAVERPA
DREDLFQNYLVDLKKKGREKAQEEQHQKRLEYRRFLESCGLINVNTQWRKVKDRLEDDER
CSRLEKIDRLEIFQEYIRDLGKEEEEQRKLKKEQIKTVERKNRDEFRKMMEEHVVSGILT
ASTQWRDYFQKVKESVAYQAVASNTCGATAKDLFEDVTEELEKKYRDDKTRVKNAMKAKK
VNVAPAWTFKDFKAAMQDAIISPPLSDINLQLVFEDLLERAKEKEKKEGKRRRRLTKDFT
ELLYGIKEINASSTWEECLQLFEESPAYRSVGDESFARVTFEEYVVSLLEKAENNKYKQE
EEKAKKEKREKNKDESNSVDVDVSESYGHKDRERKHRRRHGSPDKDDRDDSKKSRRHGSG
HRKSRKVLSNATLNYELEKFVVQHAYSPESDGEIKHKRYKKDGDDDGCGKNGGHKELEDG
EVGEDGEIC
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataaccctcagaattccggtgcacagttttggcctttgtttcctgcgcagcaa
ggacaaccgttcatgcagttggcttcaggcagtcaacaatttcgtccactgggacaaggc
atgcctcctggtcaaagtcagctgccacaattttctcagccgttgcagcaaatgtctgca
tggcctgttcggcccatccatactacaccgtcactagcttcgccgatgcctttcatgcag
ccaaatatgacttctacatcttgttcaccacaatttcagagctctgccactacaaacaat
catgtgtctggtttaggtggtcctggagtacatttatcttcttcatttacttttagcaca
tcagcatttgggcatgcacaaaataacgcgtctcctcagtttcaacctgtctcacaaatg
cgtacacctgttgccccttttggaggtcagcattggttaccttttggaactcaaggtgca
ccaactgttacacctgttgcacaaactggaatgcagcatgtgacagttgcttttacaaat
caggcgatgagtgttcctaatgttattcaagaggcatcatctgattggcaagagtataca
tctggtgatggaagaagatatttttacaacaagagaacaaaaaatacttcctgggagaag
ccttcggagttgatgacacctttggagagggttgatgcctccactgtttggaaagagttc
acaactgcagagggtaaaaaatattattacaacaaggagacaaagcaatctaaatggaag
atacctgatgaattggagttggctcgagagcaggctgagaaagaagcttctgaagggtct
caatctgggatggtgcctcaagctgatgctcctgccacttttacatcatctacactagaa
caaccttttgcttctacaagctcagttgaagacgtatctttgacgatttctggggtcgct
tcaagccctgtggcagttaagcctaacacttctgttggtaatgaccccccaaatctgggg
attgattcttcatctattgcttctgagggtatggagactccatccccagtttctcaggca
gttaatggtgctccatatgtattggtcaacacaagttcatctccaaagaccaacctggag
aattcatactcacatgctgttgctaatgctttagatggagctctggttcaggatatcaag
gaagcaaagaagggcatttcagctgctgggaaagtgaacgcagcacaatgggaggttgta
gatgttgagcccgtgttatatgcaagcaaacaggaagcaaaaattgcctttaaatcttta
ttggagtctgcaaatcttgaagctgattgtagctgggaacaggcaatgagagtgatcata
aatgataagagatatggcgtgttaaaaacacttggggaacggaaacgggcatttaatgag
ttcctgatggaaaaaaagaaattggacgtggaggagagtcgcctgagacagaaaaaagca
aaagatgaattcatgaagatgttagaggagtgcaaggaattaacatcatctatgagatgg
agcaaagctatagcattggtcgaagatgataagcgttataaggctgtagaacgacctgct
gaccgcgaagatctttttcaaaactacttggttgatcttaagaagaaaggaagagaaaaa
gctcaagaggagcaacatcagaaaagattagagtacaggcgctttcttgaaagttgtggt
ttgattaatgtgaacactcaatggcggaaagttaaggatcggttggaagatgatgaaaga
tgttcacggcttgaaaaaatcgatcgcttggagattttccaggaatatatccgtgacctg
gggaaggaagaagaggaacagaggaaattaaaaaaggaacaaataaaaacggtggagcgt
aaaaaccgtgatgaatttcgcaagatgatggaagaacatgtggtgtctggtattcttaca
gctagtacccaatggcgtgactattttcagaaggtcaaggagtctgtagcttatcaagct
gttgcttcaaatacgtgtggtgcaacagcaaaagatttatttgaggatgttactgaagaa
ttggaaaagaagtaccgtgatgacaaaacgcgtgtcaaaaatgccatgaaggcaaagaag
gtcaatgttgcaccagcatggacatttaaagatttcaaggctgctatgcaagatgccatc
atctccccacctttatcggatattaatttgcagcttgtgtttgaagacctacttgagagg
gctaaggagaaagagaagaaggaaggtaaaaggcgtcgtcgtcttaccaaagatttcaca
gagttattgtacggcatcaaggaaattaatgcatcctccacatgggaggagtgcttgcaa
ctttttgaagaaagccctgcgtatagatctgttggagatgagagctttgctcgagtgact
tttgaggaatatgttgtttctttactggagaaggcagaaaacaacaaatacaagcaggag
gaggaaaaggccaaaaaggagaaaagagaaaagaacaaggatgaatcaaacagtgtggat
gtggatgttagtgaaagttatggccataaagacagagagaggaagcaccgtaggcgccat
ggaagtcctgataaggatgatagagacgactctaaaaagtctcgtcgacatggcagtggc
cacagaaagtcaagaaaggtactttccaatgctaccctcaattatgagttggagaaattc
gttgttcagcatgcatattcacctgaatcagatggtgaaatcaagcataaaagatacaag
aaagatggagatgatgatggttgtggtaaaaatggtggtcataaggagcttgaagatggg
gaggttggagaggatggagaaatttgctag
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