Cynara cardunculus var. scolymus (artichoke): 112513997
Help
Entry
112513997 CDS
T05604
Name
(RefSeq) coatomer subunit alpha-1-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112513997
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112513997
Membrane trafficking [BR:
ccav04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
112513997
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112513997
Exosomal proteins of bladder cancer cells
112513997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR19_1st
DUF6956
Aa-Ago_N
ENTH
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
112513997
NCBI-ProteinID:
XP_024976035
LinkDB
All DBs
Position
LG 6:14156631..14179511
Genome browser
AA seq
1217 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LGQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHVNNVSSVLFHARQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILGCHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSLYYVKDRFLRFYEYSTQKETQIIPIRRPG
SVSLNQGPRTLSYSPTENAVLICSEVDGGSYELYVVPKDNFSRGDTVQEAKRGVGGSAVF
VARNRFAVLEKGTNQVLVKNLKNEIVKKSALPVATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRMVLGDLQTSFIRYVVWSNDMENVALLSKHSIIIADKKLVHRCTLHETIRVKSGSWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPLYITKIYRNTIFCLDRDGKNRPIVIDSTEYI
FKLSLLRKRYDHVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLDKLSK
MMKIAEVKNDVMGQFHNALYLGDVKERIKILENAGHLPLAYATAKTHGLTDLAEGLAAKL
EDNVPSLPSGRSASLLMPPTPVLCGGDWPLLRVMKGIFEGGLDNVGAAAQEEYEDAADAD
WGEDLDIVDVENIQNGDISMVLEDEEAHEDNEEGGWDLEDLELPPDVETPKTTTASRSSV
FVAPTAGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLSRQLGIKNFAPLKSSFIDLHIGS
HTYLRAFSSAPVLSLAIERGWSESASPNVRAPPALVFNFSQLEEKLKAGYRATTTGKFTE
ALRLFLGILHTIPLVVVESRREVDEVKELIIIVKEYVLGLQMELKRRELKDDPVRQQELA
AYFTHCNLQLPHLRLALMNAMTVCYKAGNLITASNFARRLLETNPTAENQIKTSRSVMQA
AERNMKDSSQLNYDFRNPFVVCGATYVPIYRGQKDVLCPYCSSHFVLSQEGQLCTVCDLA
AVGSDASGLLCSAAQIR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaaatttgagacgaaaagtaatagagtgaaagggctgagtttccacagcaag
aggccatggatcttggctagtcttcacagcggtgtgatccagctatgggattacagaatg
ggaactctcattgatcgatttgacgagcatgatggccctgttcgtggtgttcatttccac
aaatcgcaacctcttttcgtctccggaggagacgattacaagatcaaagtatggaactat
aaattgcatagatgtttatttacacttcttgggcatctggattacatccggacagttcaa
ttccaccatgagtacccgtggattgttagtgccagtgacgatcaaaccatcaggatatgg
aattggcagtctcgtacttgtatatctgttctgacaggacacaatcattatgtaatgtgt
gctttgttccatccgaaggaggaccttgttgtatcagcatcattagatcaaaccgtacgt
gtttgggatattggtgccctgaggaagaaaacagtatctcctgctgatgacattcttcgc
ttgggtcagatgaatacagattttttcggtggggttgatgctgttgtaaagtatgttttg
gagggccatgatcgaggcgtgaattgggcttcattccatcccactctccctcttattgtc
tcaggagctgatgatcgccaagtgaagatctggcgtatgaacgatacaaaggcttgggaa
gtagacactctaagaggtcacgtgaacaatgtgtcaagtgttcttttccatgccaggcag
gacattattgtgtcaaattctgaggataaaagtatacgtgtctgggatgctacaaagagg
acaggccttcaaacgtttcgcagggagcatgacaggttctggattcttgggtgtcatcct
gagatgaaccttctggcagctggccatgatagtggcatgatagttttcaagttggagagg
gaacgccctgctttctctgtcagtggtgattctctttactatgtcaaagaccgttttctg
cgtttttatgagtattcaactcagaaagagactcaaatcataccaatccgtaggcctggt
tcagttagcttgaaccaggggcctagaactctttcttatagccctacagaaaatgcagtt
ttaatatgttcagaagtagatgggggatcatatgaactctatgttgtacctaaagataac
tttagtagaggtgatacagttcaagaagcaaaaagaggggttgggggatctgcagtcttt
gttgcccgcaatagatttgctgttcttgagaagggcaccaatcaagtgttggtcaagaac
ttgaaaaatgagattgtaaagaagagtgcccttccggttgctactgatgcaatattctat
gctggcacaggtaacttgctatgcagggcagaggacagggtagttatctttgaccttcaa
cagcgaatggttcttggggaccttcaaacctcttttataaggtatgttgtttggtcaaac
gacatggagaatgttgctttgctcagcaagcattctataatcatagctgataagaaactt
gtccatcgctgcacccttcatgagacgatccgtgtcaagagtggatcctgggatgataat
ggtgtattcatatacacaaccctaacacacatcaagtactgcctacccaatggagacagt
ggaatcataaagactcttgacgttcctttgtacatcacaaagatatatagaaatacaatc
ttttgccttgatcgggatgggaaaaaccgtccaatagtcattgattccactgaatatatc
tttaagctgtctttgctgagaaagagatatgatcatgttatgagcatgataaggaattca
gagctgtgtgggcaagccatgattgcatatctccagcaaaaaggttttcctgaggttgct
ctccattttgtgaaggatgagagaactcgttttaatttagcacttgaaagtggaaatata
cagatagccgttgcttctgccaaagagattgatgagaaagatcactggtataggttgggg
gtggaggccctacgccagggtaatgctggaattgtagaatatgcataccagaggacgaag
aactttgagagattatccttcctctatctgattacaggcaatttagataaactgtccaaa
atgatgaaaattgcagaggttaaaaatgatgttatgggtcagttccataatgccctgtac
ctgggtgatgtcaaagagcgaattaagattttggagaatgctggtcatctgccactagca
tatgctacagccaagacccatgggttgactgatctcgctgaaggacttgctgctaaactt
gaggataatgttccttctttgcccagtggtaggtctgcttctcttttgatgcccccaact
cctgtcttgtgtggtggagactggccgttactgagggtcatgaaagggatctttgagggt
ggtcttgacaatgttggagcagctgcacaggaagagtatgaagatgccgcagatgctgat
tggggtgaggatttggatattgtggatgtggagaacattcaaaatggagatatcagtatg
gttctggaggatgaagaagcacatgaagataatgaagaaggaggttgggaccttgaagat
ctagaacttcctcctgatgttgagacccccaaaactactactgcttctcgctcttcggta
tttgtggcaccaactgctggtatgcctgtgagccagatttgggttcaaaaatcatctctt
gctgctgaacatgcagcagcaggcaactttgacactgcgatgcgcttgctgagccggcag
ctgggaataaagaactttgcacccttaaagtcatcatttattgatcttcacataggcagt
catacttacttgcgagctttctcatcagctccagtgctctccttggctatagaaagaggt
tggagtgaatcagcgagcccaaatgttcgggcccctcctgcacttgtgtttaatttttct
caattggaagaaaagctcaaggctggttacagagctacaactacggggaaatttactgaa
gctttgcggctttttctgggtattctccataccattcccctggtagtagttgagtcgcga
agagaggtggatgaagttaaagagttgattatcatcgtaaaagaatatgttctgggttta
cagatggaacttaaaaggagagaactgaaggatgaccctgttcgtcagcaggagttggcg
gcttacttcactcattgtaaccttcagctgcctcacttgagacttgccttgatgaatgct
atgactgtgtgctacaaggcaggcaatctcatcacagcatcaaactttgccaggcgactc
ttggagaccaacccaactgctgaaaaccaaatcaaaacatcccgctcggttatgcaagct
gctgagaggaacatgaaagattcctcacagctgaattacgacttcagaaatccatttgtt
gtttgtggggcaacttatgttcctatttaccgtggacagaaggatgtattgtgcccatac
tgcagttcacattttgttctttcacaggaagggcagctttgtactgtttgtgatcttgca
gcagttggatcagatgcatctggtttactctgttctgcagcacaaatcagatga
DBGET
integrated database retrieval system
