Cynara cardunculus var. scolymus (artichoke): 112514028
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Entry
112514028 CDS
T05604
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03022
Basal transcription factors
ccav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112514028
09124 Replication and repair
03420 Nucleotide excision repair
112514028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112514028
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112514028
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112514028
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112514028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
112514028
NCBI-ProteinID:
XP_024976082
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Position
LG 6:complement(15320791..15329263)
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AA seq
591 aa
AA seq
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MTDAQIVKRAKYKSSVKDPGVRGILKMTRERFVFMPNDPSLPIRLNVEFRLIKGHKSSKE
GSNRPALLNLTQDQGNYIFEFENFSDRELCRDFVAKAITSSGEVGGPTSEKAVPLKDEQL
SSAEMERRIKLLQEDSELQKLHKQFVIGGVLSETEFWATRKKLLDVSASRKAKQRVGLKS
DMIFNVKPSSDGQSNRVTFNLTPEMIHQIFAEKPAVRQAYLNFVPNKMTEKDFWTKYWRA
QYLHSTKNIVAAAAEAAEDEELAVFLKQDAILASETRQKIRKVDPTLDMEADEGDDYTHI
PGHGLATESTKDEMEAQYEPYKRSFLQDINRHAAVVLEGRTVDVETGDTRSVAEALASSK
RIELAKEASDGNVYQERLDRITRMAEIEDLQAPRDPPVAPLCIKDPRDYFDSQQVQLGGT
RQVKSRLSTSEAYGSLRVFISEIRNIGLNDPIVKPEVAIKVFNVLTQNISSSKYQLGKNP
HESILDTLPSVTKEELLLHWTSIQELLKHFWSSYPITTSYLYAKVSRLKDAMSQIYPKLQ
EIKESVQSDSRHQVSLLVQPMLQALDAAFAHYDLDQQKRSAKSGEKPNGYA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcgcagatagttaaacgtgctaagtacaaatcttctgttaaagaccctggc
gtccgtggcatattgaaaatgaccagggagagatttgttttcatgcctaacgatccatcg
ttgcccatcaggcttaatgtagaatttagacttataaaaggacacaaatccagcaaggag
ggttcaaacagacctgccttacttaatcttactcaagatcagggcaattacatcttcgaa
tttgaaaatttctcagacagggaactttgccgagactttgtagccaaagctattacatct
tctggggaagttggaggacctacctctgaaaaggctgttccactcaaggatgaacaactt
agctcagcagaaatggagcgtcgaattaagttacttcaagaggacagtgagttgcagaag
cttcataagcaatttgtgattggaggtgtgctgtcagagaccgaattttgggctacaaga
aagaagttgctagatgtgagtgccagcagaaaagcaaaacaacgggtggggttaaaaagt
gacatgattttcaatgtgaaaccatcatctgatggtcagtcgaacagagtcacatttaac
ttgacgccggagatgattcaccagatttttgctgaaaaaccagcagtacggcaggcatat
ctgaattttgtacctaacaagatgacagagaaggacttttggactaaatattggagagca
caatacctccacagtacgaaaaatattgttgctgctgctgcagaggctgccgaagatgag
gagctagcagttttcttaaagcaagatgccatattggctagtgaaactcggcagaagatt
agaaaggtagatcccaccttggacatggaggctgatgaaggggatgattacacacatatt
ccgggtcatggcctagctactgagagcaccaaggatgaaatggaagcacaatatgagcca
tataaaagatctttcttgcaagacattaaccggcatgctgcagttgttcttgaaggaaga
accgtagacgttgagacaggagatacaaggtctgtagctgaagcacttgctagttcaaaa
cgcattgagttggctaaagaagcttctgatggcaatgtatatcaagaacggttagatagg
ataactcgaatggctgagattgaggacctacaagcaccacgtgatcctccagttgcacca
ctttgtataaaggatcctcgagattacttcgattctcaacaagttcagttaggtggaacg
agacaggtgaaatctaggctgagcacctctgaagcttatggttctttaagggtgttcatc
tcggagattagaaacataggtttgaatgatcctatagttaaacctgaagtggccataaag
gttttcaacgtattgacccagaatatatcgagctccaagtatcaacttggcaaaaaccca
catgagagcatattggatacgttgccaagtgttacaaaggaggagcttttgcttcattgg
acgtcaattcaggaattattaaagcatttctggtcttcgtatcccattacaacttcatac
ctttatgccaaggtgagccggctgaaggatgccatgtcgcaaatctacccaaaactacag
gagatcaaagaatctgtgcagtcagattccaggcatcaagtttccctccttgttcaacca
atgttacaggctttagatgctgcgtttgcacactacgatctagatcaacagaagagatct
gcaaagagcggtgagaaaccgaatggatatgcctga
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