Cynara cardunculus var. scolymus (artichoke): 112514351
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Entry
112514351 CDS
T05604
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112514351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112514351
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112514351
Complex B
112514351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_RHG35_4th
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
112514351
NCBI-ProteinID:
XP_024976546
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All DBs
Position
LG 6:complement(10077120..10102659)
Genome browser
AA seq
1099 aa
AA seq
DB search
MRWEVVDLCCRKKCESLLSYWKEKAVVRQPQVQLGYKRMDSLFARMANNSQYPGIQPPRP
PVAPMGPPQSAYPPVPMQFHPAGPPRPPPPYMPLVSQQFLPVGRPNIGLPSQSQQLQLSQ
PMPHLPPRPGPPAHSMVPPPPPPPVPAPQAFSVPDGQPIRPGLSVSPQPQHAVPMHNNYL
PGPSGPRVPLSLTYSQLSTSATAQIHVNAEATNQYQQTSSTNMPSFPLSGSAWSSDGQTT
KAVTPVLQPAEQISLAPSVPVTIDASKAVGKAPSDWIEHTSRNGKRYYHNKKTKLSSWEK
PLDLMSPIERADASTDWKEYTAPDGRKYYYNKGTKQSKWKMPDELKLARQQMKTKSSTEE
QEPTKDPDYEASAPSVTGLVSLARDADSPSSGAHEIVSSPVSVAPLVAAAQSGPVVTAEF
STGSRPSSNATSNAAEGQDDLKTVPITSEETEVPATLLNPAAPALSNTEDVSAKDSVAAE
NGPPAGNIEESEKGNVINHGANFMEEKTLDQENQVYENKQDAKIAFKALLENANIASDWT
WDQAMRVIINDRRYGALRTLSERKQAFNEFLGQKKKKEAEERRNRQKKAREEFKKMLDDS
KEITSSTKWSKAIAIFEDDDRFKAVERSKDREDLFEDHIMELEKKERSKALEEHKRNRKE
FIEFLKSCDFITASSQWRKVQDRLEADESCLRLEKVDRLEIFQEYVRDLEKDEEEQRKLR
MEELRKTERKNREEFRKLMEGHIASGMLTSKTHWRDYCIKVKDLPAYLAVSSNSSGATPK
DLFEDVIEELEKQYLEDRDQIKEAVKMRKVSISSTWTLEEFKSAIAEDISSYTISDVNLK
LVFDELQERVREREEKETKRRKRLADDFYLSLSTSKEITSSSRWEDLKPLFEDRLESWFT
VEESFYREIFDKYMTELKKARDERKHREEKAKKTVDRDRRTSSKSRRDKERGKKDKRRKE
ETDSDNGEENRRSGREKDKKHRKRHHQSYLEDMSLEEDEKEKDRSHRHSIERKRTKQQQL
EQQSSATAGSVEYESRHKRYKRDHRHYDDQKEAEDGEVWPGVCMGTAALSFEVEIRSAYI
SPLLDPAFVRDILGLVCLI
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgggaggtggtagacctttgctgcagaaagaaatgcgaatctctgttatcctat
tggaaagaaaaagccgtggttcgtcaaccacaagtacaattgggctacaagagaatggat
tctttatttgctcggatggccaacaattctcaatatcctggcatacagcctcctcgacct
cctgttgctcccatgggtcctcctcaaagtgcttacccaccggtgccaatgcaattccac
ccagcaggtccaccacggccgccaccaccatatatgcctttggtgtctcaacagttttta
cctgtggggaggccaaacattggactgccttctcaatcgcagcaactccagttgtctcag
ccaatgccacatctacctcctagacctggaccaccggcacatagcatggtgccacctcct
ccacctcctcctgtgccagctccccaagctttttcagtgcctgatggtcagccgatcagg
cctggattatctgtatcacctcaaccccaacatgctgttccaatgcataataattatttg
cccggtccaagtggcccaagggtgcctctttctttaacgtatagtcagctatcaacatca
gcaactgcacaaatacatgtaaatgcagaagcaactaaccagtaccagcaaacatcctca
acgaatatgcctagttttcctctaagtggatcggcttggtcctcagatggccagaccaca
aaggctgttacacctgtgttgcagcctgctgaacagatatcacttgcaccttctgttcca
gtaacgattgatgcatctaaagctgtcggaaaggctccatcagattggattgaacatacc
tctcgcaatggaaaaagatactatcacaacaaaaagacaaagctgtctagctgggagaag
cctcttgatctaatgagcccgattgagagggctgatgcatccacggactggaaggaatac
actgctcctgatggaagaaagtattattacaataagggcaccaagcaatcaaagtggaag
atgcctgatgaactcaagttagctcgtcaacaaatgaagactaaatcttctactgaagag
caggagccaacgaaggatcctgattatgaagcctcagctccgtcagtgactggtctcgta
tctttagcccgtgatgcggatagcccatcatctggagctcatgaaattgtgtcaagccca
gtttcagtggcgcctcttgttgccgctgcacaatcaggacctgtagtgactgctgagttc
tcaacaggatcgagaccgtcttctaatgcgacttcaaatgctgctgaagggcaggacgac
cttaaaactgtgcctattacttctgaagaaacagaagtgcctgctacattgctcaatcct
gctgcaccagcattgagcaacactgaggatgtttcagcgaaagattctgtagctgctgaa
aatggacctcctgctggtaacatagaggaatccgagaaaggcaatgtaatcaaccatggt
gccaattttatggaagaaaaaacacttgatcaggaaaaccaagtttatgagaataaacag
gatgcaaaaattgcattcaaggctcttctggaaaatgcaaatattgcctccgactggacc
tgggatcaggcaatgagagtaatcatcaatgacagaagatatggtgctcttagaacactc
tcggagcggaagcaagctttcaatgagtttctaggacaaaagaaaaagaaggaagcagaa
gagagacggaacagacagaaaaaggcacgagaagagtttaagaaaatgctagatgattca
aaagagattacgtcatccactaaatggagcaaagcgattgcaatatttgaggatgatgac
cgtttcaaagctgttgagcgatctaaagaccgcgaggacctatttgaggatcatataatg
gaacttgagaaaaaggaacggtctaaggctttagaggagcacaagagaaacagaaaggag
ttcattgaatttttgaaatcctgtgacttcatcacggcgagcagtcagtggcggaaagtg
caagatcgcttagaagctgatgaaagttgcttgcgccttgaaaaagttgaccgtctagaa
attttccaagaatatgtacgtgatttagagaaggatgaggaagagcaacggaaactgcgg
atggaagaattaaggaaaacagagcgtaaaaatcgtgaagagtttcgcaagttgatggaa
gggcatattgcttctggcatgcttacttcaaaaactcactggcgtgactattgcattaaa
gtaaaagatttacctgcatatttagctgtgtcatcaaacagttctggggccacccctaaa
gatctgtttgaagatgtaatagaggagctagagaagcagtatcttgaggacagggatcaa
ataaaagaagcagtgaaaatgagaaaggtttccatttcctctacatggactcttgaagaa
ttcaagagtgcaattgccgaagatattagctcatacacaatttcagatgtcaatttaaag
cttgtatttgacgagttacaagagagagttcgcgaaagggaggagaaagaaacgaaaagg
cgtaaacgtcttgcagatgacttttatttgtctttgagcacttctaaggaaattacttca
tcttcccgatgggaggaccttaaacccctctttgaagatagactggaaagctggtttaca
gtggaagaaagcttctatagggagatctttgacaaatacatgacagaactaaagaaagca
agagacgagcggaagcacagagaggaaaaggcgaaaaagaccgtggatagagatagaagg
acgtcatcaaaatcaagaagggacaaggaacgaggtaagaaagataagcgtagaaaggaa
gaaacagatagtgataatggtgaggagaatagaaggtcaggaagagaaaaggacaagaag
caccgaaagcggcatcatcagagttatttggaggatatgagcttggaagaggatgagaaa
gagaaagatcgatctcacagacacagtattgaacgtaaaaggacaaagcagcagcagttg
gagcaacagtcatctgctactgctggttcagttgaatatgagagccgacacaagagatac
aagagagatcatagacactacgatgatcagaaagaagctgaggatggcgaagtttggcca
ggggtctgcatgggaacagccgctctatcatttgaagtagagatcaggtctgcatacata
tcacccctcctagaccctgctttcgtacgagatatactgggtttggtttgcttgatttga
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