KEGG   Cynara cardunculus var. scolymus (artichoke): 112514368
Entry
112514368         CDS       T05604                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013  Nucleocytoplasmic transport
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112514368
  09122 Translation
   03013 Nucleocytoplasmic transport
    112514368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112514368
   03041 Spliceosome [BR:ccav03041]
    112514368
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     112514368
Spliceosome [BR:ccav03041]
 Complex C
  Other components
   EJC/TREX
    112514368
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112514368
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st eIF2A NBCH_WD40 WD40_RFWD3 Beta-prop_EML Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 TRM82_WD Tricorn_2nd WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_IFT80_2nd Beta-prop_Nup120_160 Beta-prop_WDR41 PAC11 CFAP251_N B-prop_COPA_B_2nd WD_LRWD1 DUF7099 Beta-prop_ACSF4 Beta-prop_WDR11_1st PD40
Other DBs
NCBI-GeneID: 112514368
NCBI-ProteinID: XP_024976573
LinkDB
Position
LG 6
AA seq 313 aa
MAETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIESHGHSKVKDLE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDVRSGKCSQQAELSGENINITYKPDGS
HVAVGNRDDELTILDVWNFKPIHKRKFNYEVNEIAWNMTGDMFFLTTGNGTVEVLAYPSL
RAVDTLTAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF
NHTGEYIASASEDLFIDISNVHTGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFDSA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggcagaaacaatacccttcaaaaacctccacagtagggaatatcagggccacaagaag
aaggtgcattcggtagcgtggaattgcactggcacaaagcttgcgtctggttctgtagat
caaacggctagagtgtggcatatcgagtcccatggtcacagcaaggttaaagatcttgag
ctaaaggggcataccgatagcgtggatcagttgtgttgggatcctaaacatgctgatttg
attgccactgcatcgggtgacaagactgttcgtctatgggatgttcgcagtggaaaatgt
tcacagcaagcagaacttagtggggaaaacattaatatcacatataaaccagatgggagt
catgtagccgtggggaacagggacgatgaactgacaatactggatgtatggaacttcaag
cccatccataaacgcaaattcaactatgaggtaaatgaaattgcgtggaacatgactggg
gatatgttcttcttgactactggaaatggtactgttgaagtactggcctacccatctctt
cgagcagttgacaccttgacggctcatacagctggttgctattgcattgctattgacccc
ttagggagatattttgctgttggaagtgccgactccttggtcagtctttgggatatctca
gaaatgctttgtgtgcgaacgttcacaaagctcgaatggccggtccggaccataagcttc
aatcatactggtgaatatattgcttctgctagtgaagacttgttcattgacatatcaaat
gtacacactggacggtcggttcatcaaatcccgtgtagggcagccatgaacagcgtggaa
tggaatcccaaatacaatttgcttgcatatgctggggatgacaaaaataagtatcaggct
gatgaaggtgtttttcggatatttggatttgacagtgcataa

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