Cynara cardunculus var. scolymus (artichoke): 112514463
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Entry
112514463 CDS
T05604
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112514463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112514463
03041 Spliceosome [BR:
ccav03041
]
112514463
03036 Chromosome and associated proteins [BR:
ccav03036
]
112514463
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112514463
Spliceosome [BR:
ccav03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112514463
Complex B
112514463
Complex C
U2 SnRNP specific factors
112514463
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112514463
TFTC complex
112514463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
112514463
NCBI-ProteinID:
XP_024976718
LinkDB
All DBs
Position
LG_1
Genome browser
AA seq
1390 aa
AA seq
DB search
MAVSEEESSSASGNNSKSLPSHGGPHYLAKCVLKGSVVLQIVYGHIRSPSSKDIVFGKET
SLELVIIDDYGVLQSICEQPVFGTIKDLAILPWNRRASPQVQGKDLLLVTSDSGKLSVLT
FSNEMHRFFPLTQVQLSSSPGNLRHHVGRMLAVDSNGCFIATSAYEDRLALFSVSSSGGA
DIIDKKIFCPSDIENNTSTSTGVSGIHGTIWSMCFISKDMSQPHKEHNPVLAILLNRKGS
LLNELLLLEWNTRENFVHVLSQYAELGPLAHDIVEVPNSYGFAFLFRVSDALLMDLRDAH
NPLCVYRTSLNFLPSVVDEHTFVEESYRTNDVDEEGNICNVAASALLELKDIIKDDDPMN
IDDDSGYSSKSTSNRVCSWSWEPGNEENPRMIFCVDTGELFMIELSSDPTGLKVNLSDCL
YKGLPFKELLWAEGGFFTALAEMGDGMVLKIEEGKLQYKSPVQNISPILDMSLVDYHDEK
HEQMFACCGMAPEGSLRVIRNGISLEKLLKTAPVYQGITGTWAMKMKLVDCYHSFLVLSF
VEETRVLSVGVSFTDVTDSVGFSPDVCTLACGIIGDGLVVQIHQNAVRLALPTAAAHPDG
IPFTSPNCTSWFPDNMTISLGAVGHKFIVVATSNPCYLFVLGVRRLAAYQYEVYQLQHVR
LDYELSCISIPQKPLQADPSNSFYQLSSNHLVMDPTNGVEIGNTFVIGTHRPSVEVLSFI
PDQGIRALAIGIISLVNSTGTTISGSVPQDVRLVQVDRLYILSGLRNGMLLRFEWPSVST
NSSLESPKARPYVSSINSFTSTSPHSTSAMHSCIISEMTKDNVPVCLQLISIRRIGITPA
FLVPLNDLPDADVIALSDRPWLLQTARHSLSYTSISFQASTHATPVCSKECPNGILFVSE
NSLHLLEMVHSKRLNVQKFHLEGTPRKVLYHAESRLLLVLRTDLSENSCSSDICCVDPLS
GSVLSSFKLDPGETGKCMELLKVGSEQVLVVGTSLSTGPAIMPSGEAESTRGRLIVLCLE
HKQNSDSGSMTFYSKAGSSSQRTSPFREISGCGAEQLSSSSLCSSPDDNSSDGIKLEETE
VWNLRLAYSTNMRGIVLAICPYLGCYFLASAGSAFYVCSFQNDNSLRVKRLAVGRTRFMI
MTLTTHFTTIAVGDCRDGILFYAYYEDAKKVEQLYSDPVQRLVADCLLMNIDTAVVSDRK
GSIAVLSCSHHSGENASPECNLKVCSSFYMGEIAMSIRKGSFSYKLLADDEMRDCDIASS
IMDLSHSSIVASTLLGSIMIFVPISRDEFELLEDVQSRIAVHPLTAPILGNDHNEFRSRQ
SSVWAGIPKILDGDMLAQFLELTNTQQEDVLALPRAPHNIFTSRSSKPPLSRINVNKVVR
LLERVHYALN
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtcggaggaggaatcatcgtcggcgagtgggaacaactcaaaatcactgcca
tcccatggcggtcctcactaccttgctaaatgtgttcttaaaggaagcgttgtccttcaa
atcgtctacggtcacatccgatccccttcctctaaggacatcgttttcggcaaggaaaca
tccttagagttggtaattatagatgattatggagttctgcagtccatatgtgagcaacct
gtatttggaacaatcaaagatcttgctattcttccctggaatcgtagagcaagcccacag
gtacaaggaaaggaccttttgcttgttacttcagactccggaaagctctcggttctcact
ttctcgaatgaaatgcacaggttcttccctttgacacaagttcagctatctagctcacct
ggaaacctaaggcatcatgttggaagaatgttggctgttgattccaatggttgtttcatt
gctacaagtgcatacgaggaccgtctagctctgttctcagtttctagttccggtggcgct
gacatcatcgataagaaaatattttgtccttctgacattgaaaataatacgagtacaagc
actggagtttctggtatacatggtactatatggagcatgtgctttatctcgaaagatatg
agtcaaccacacaaggagcacaaccctgtgttagccattcttctaaatagaaagggatca
cttcttaatgagcttttgttattagaatggaatactagggagaactttgtccacgtacta
tctcagtatgctgagcttggacctctagcacatgatatagttgaagttcccaattcttat
ggattcgcatttctcttcagagttagtgatgctcttctgatggatcttagggatgcacac
aaccctttatgtgtgtacagaacaagcctaaacttcttaccgtcagtggtggatgagcat
acttttgttgaggaatcgtatcgaacgaatgatgtcgatgaagaaggtaacatatgcaac
gttgctgcatctgctcttttggagctgaaagacataattaaggatgatgatcccatgaac
atagatgatgatagtggttattcatcaaagtcaacgtccaatcgtgtgtgctcatggagt
tgggaaccaggaaatgaagaaaatccaaggatgatattttgtgttgatactggagagctt
tttatgattgagctttcttctgatccaactggtcttaaagtcaacctctctgattgtctc
tataaaggtttaccatttaaagagcttttatgggccgaaggtggattttttactgcactt
gcagaaatgggtgatgggatggtactgaaaattgaagaagggaagctacagtacaaaagc
ccagttcaaaatatttcgccaatattggatatgtcactcgtggattaccatgatgagaaa
catgaacaaatgtttgcttgttgtgggatggcaccggaaggatcgttaagggttatccga
aatggtatcagtttagagaaactattgaaaactgcccctgtttatcaagggatcacgggt
acttgggcaatgaaaatgaaattagttgattgttaccattctttccttgtgctatctttt
gtagaagagacaagggtgctttccgttggtgtaagctttactgatgtgactgattcagtt
ggcttcagccctgatgtatgtactctagcgtgtggtattattggtgatgggttggtggtt
cagatccaccagaatgcagttcgacttgctttacctacggctgctgctcaccctgatggt
attccttttacgtctccaaattgtacatcttggtttcctgataacatgaccattagtctt
ggggccgtggggcataagtttatagttgtcgcaacttccaatccatgctacttatttgtt
cttggggttagacgtctggcagcttatcaatatgaagtataccagttgcaacatgtcaga
ttggattatgaattgtcctgcatctccattcctcaaaaaccacttcaggcagacccgtct
aactctttttatcagctctctagtaaccaccttgtgatggatcctacaaatggagttgaa
attggaaatacttttgttataggcacacataggccttcggtggaggttctatcttttata
cctgatcaaggcataagagctcttgctataggaatcatttccttagtaaacagtacggga
acaaccatcagtggatcggtacctcaggatgtaaggcttgtacaagttgatcgactttat
atcctttcagggctgaggaatggcatgctacttcgatttgagtggccatctgtatctacg
aattcatcattagaatctccaaaggcacgaccatatgttagttcaattaactcattcacg
tcgacttcaccacatagcacctcggctatgcattcatgcattatatctgagatgacaaag
gacaacgtccctgtttgtcttcagttgatttcaatccgtcgtattggtatcactccagcc
ttcctggttccattgaatgatctccctgatgctgatgtaattgctctcagtgataggcct
tggttattacaaactgcaaggcacagcctctcatacacctctatctctttccaagcatcc
acacatgcaactccagtatgctcaaaggaatgtcccaatggaattttatttgtatctgag
aacagtctccatttgttggagatggtgcacagcaagagactgaacgtccagaagttccat
ctggaaggaacgccacgcaaagttttatatcatgctgaaagcagattgttgttagtttta
aggacagatctgagtgaaaattcgtgttcatcggatatatgttgtgtggaccccctgagt
ggttcagttttgtcatcttttaaacttgatcctggggaaacagggaagtgcatggagtta
ctgaaggtggggagtgaacaagtattggtggtgggaactagtctctccaccggtcctgct
ataatgcctagtggtgaagctgaaagtacaaggggccgattgatagtcctctgccttgag
cacaaacaaaattcagatagtggctcaatgacattttattcaaaagccggctcatcttcc
caacgaacttcccctttccgcgaaatcagtggttgtggagcggagcaactttcaagtagc
agtctgtgcagcagccctgacgataatagttcggatgggataaagcttgaagaaactgaa
gtatggaatctacgattagcttattcaaccaatatgcgtgggatagtgcttgccatctgc
ccttatctgggctgttatttcttggcctctgccggcagtgctttttatgtctgcagcttt
caaaacgataattctctaagggtcaaaagattggctgttggaaggacgcggtttatgatc
atgactttgaccactcacttcactactattgctgttggtgattgtcgtgatggcattctt
ttctatgcatattatgaggacgccaagaaggtggagcaattatatagtgaccctgtccag
aggctggttgctgattgccttcttatgaacattgatacagctgttgtttcagatcgcaag
gggagcattgcagtcttgtcttgttcgcatcactcaggtgaaaatgcaagtccagaatgc
aacttaaaggtttgttcatccttctatatgggtgagatcgcaatgagcatcagaaagggt
tcgttttcatacaaacttctggctgacgatgaaatgagggactgcgacattgctagttca
attatggatttatcacacagtagtattgtggcaagcacattgttaggaagcataatgatc
ttcgttcctatatcaagggatgaatttgagcttttggaagatgtacaatccaggattgca
gttcatcctttgacggctcctattcttgggaatgatcataacgagttccgcagccgtcaa
agttcggtatgggcagggataccaaagattcttgatggggatatgctagctcagtttttg
gagctcacaaatacccaacaggaggatgtactagctttacctcgagcccctcataatatc
ttcacatcacgtagttcaaagccaccactttcacggatcaatgttaataaggttgtgcga
cttcttgaacgagttcactatgctctaaactga
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integrated database retrieval system
