Cynara cardunculus var. scolymus (artichoke): 112514512
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Entry
112514512 CDS
T05604
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112514512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112514512
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112514512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
112514512
NCBI-ProteinID:
XP_024976791
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All DBs
Position
LG 6:complement(17724368..17727896)
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AA seq
466 aa
AA seq
DB search
MAIQHGVMEKMESDFGKLFIGGISWETDEGRLKEYFASYGEVVEAVIMRDRITGRARGFG
FVVFADPAVAERVVMEKHMIDGRTVEAKKAVPREDHHVPNRNNGGIQGSPAAPGGRTKKI
FVGGLASTVTENDFKKYFEQFGAITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLHKTF
HELNGKMVEVKRAVPKELSPGSSRSPLVGYSYGLTRPNPFLATNYPQGYNMSPIGGYGGR
TDSRFSPIAGGRTGFSPFGSSGYGMGMNLEPISPSGFGGTSNNMGYGRVLSPYFGGNSNR
YITPIGYNQSNVRNESFIGSSNRNVWGNGGLTSPAGSGAYLGSGNGGFGVFGNGPNWGSS
PISGVSSSGYNSGSIGGLGGAENSYGIGGGGIGRNNGGHEGSYGNLYRGGSMYGDPTWQA
SSNELDGSGSFGYGLDGSEDGAGRSSEGYVGNYNIANRQTNRGIAA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcaacatggggttatggagaagatggagtctgatttcgggaagctgtttatt
ggtgggatatcgtgggagacggatgagggtcggttgaaggagtattttgctagttatggt
gaagtggttgaggctgtgatcatgagggatcgaatcactggtcgtgctcgtggatttggg
tttgtggttttcgctgatcctgctgttgctgaaagagttgtaatggagaagcatatgatc
gatggtcggaccgttgaagcaaagaaggcggttccgagggaagaccaccacgtaccgaat
agaaacaatggcggaatccaaggatcaccggcggctcctggtggccgtacaaagaagata
ttcgttggaggtttagcatccaccgtcaccgaaaacgacttcaagaaatactttgaacag
tttggtgccattacagatgtggtggtgatgtatgatcacaacacccaaaggccaagaggt
ttcggattcatcactttcgattcagaggaagctgtagatagggttctgcataagaccttt
catgaactcaacggtaaaatggtggaggtcaaacgggccgtcccaaaagagttatcaccc
gggtccagccggagcccgttggttggatatagctacgggttaaccagacccaatccgttt
cttgccactaactaccctcaaggctataatatgagcccgattggaggctatggaggtaga
accgacagccggttcagtccaattgctggtggccgaactgggttctcaccatttggttca
tctggttacgggatgggcatgaacctggagccgattagcccgagtgggttcggagggacc
tctaataacatggggtatgggcgcgttttaagcccgtattttggtgggaactcaaaccgg
tacatcactcctatcggatacaatcaaagtaatgtcagaaatgagtcgtttataggttcg
tcgaaccgaaacgtttggggaaacggtgggctcacgagcccggctgggtcgggtgcgtat
ttgggttcaggaaatggcggttttggggtgtttggaaatggaccgaattggggttcttca
ccgatatctggggtgagttcttcgggctacaatagtggaagtataggaggtttagggggt
gcagaaaatagttatgggattggaggtggtgggattggaagaaacaatggaggtcatgaa
gggtcttatggtaatttgtatcgtggcggttcgatgtatggtgacccgacttggcaggct
tcgtctaatgagctagatggttcaggttcgttcggttacgggcttgacggttcagaagat
ggtgcaggccgaagttcggagggctatgttgggaactataacattgcaaatagacaaact
aatagggggattgctgcatag
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