Cynara cardunculus var. scolymus (artichoke): 112514530
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Entry
112514530 CDS
T05604
Name
(RefSeq) CCR4-NOT transcription complex subunit 9
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112514530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112514530
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112514530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
DUF2249
Motif
Other DBs
NCBI-GeneID:
112514530
NCBI-ProteinID:
XP_024976818
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All DBs
Position
LG 6:complement(16560834..16569356)
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AA seq
284 aa
AA seq
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MQSAEQLVLDLSSPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPFLS
PPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLT
SLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDY
ICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLR
DATFSSCLREDPTTRRWLQQLVHNVQGPRVGLQGGGGFDHMLVN
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccgccgagcagttagtactcgatctcagcagtcctgatcttcgcgaaaatgcg
ctacttgagctttccaagaagagagaactgtttcaggatttggctccactattgtggaac
tcctttggtaccattgcagctctgttacaggagatagtttcaatatacccctttctctca
ccacccaacttgactccagctcaatcaaacagagtctgcaatgcacttgcgcttcttcag
tgtgtggcttcccatccagacacaagaatgctgttcttgaatgctcatattcctctatat
ttataccctttcctcaacactacgagcaaatcaaggccatttgagtatctgaggcttact
agtttaggtgtcattggtgccctggtgaaggtcgatgacacagaagttatcagctttctg
ctttcgacagaaataatccccctgtgcctgcgcacaatggaaatgggaagcgaattgtca
aaaacagttgcgacatttatagttcagaagatcttgttggatgatgtggggttggactac
atatgcacgacagctgaacggttctttgcagttggtagggttttgggaaatatggttgcc
gcacttgctgaacaaccctcttcccgcctcttgaagcacatcatccgctgctaccttcgc
ttatccgataatccaagggcatgtgatgctttgaggagttgtcttccagatatgctacgg
gatgctacttttagcagttgccttcgtgaggatccaacaacgagaaggtggcttcaacaa
ctggttcataacgttcaagggcctcgcgtcggtcttcagggaggtggaggatttgatcac
atgttggtgaactga
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