Cynara cardunculus var. scolymus (artichoke): 112514624
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Entry
112514624 CDS
T05604
Name
(RefSeq) DNA mismatch repair protein MLH3 isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112514624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112514624
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
112514624
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112514624
NCBI-ProteinID:
XP_024976971
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Position
LG 1:17641618..17654565
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AA seq
1224 aa
AA seq
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MRSIKALPESVRSSMRSGIILFDLTRVVEELVFNSLDADATKVIVAINVGTNYIKVTDNG
CGITRDGLVLLGERYATSKFELLADMNTVPESFGFRGEALSSISDVSLLEVVTKAHGMPN
GYRKVIKGCKCLYLGIDDDRQDVGTTVVVRDLFYNQPVRRRHLHSSPKKVLHSVKECILR
IALVHLGTCFKIIDIESGDEILCLYPSSSPLPLLMSGFGTEVTSSLHKLDASEGELRLSG
YISGPYETLSVKAFQYFYISSRYVSRGPLHKLLNQVATMHSSSDLLKADIRSQCGKRSRC
QASPTYILNLTCPRAQYDLSFEPTKTCVAFKDWDPIFTFVKKAVSCFWSQGMPYGAPMSE
EDAIWKGADALAMSDDLLDDYGLSKKRRMTLCHQAVLSSPPQKMPREEPKHMPYHGYSSN
RSQRKAVQSKEYRIEMDFDCLTDNLLEFGGRSLPERKTSVLQESGNHLGKPNSYISSEDI
YLQNKCSRELSSEYVDHLSDAKWNPNSLQTDYGTNNRLVVKEPSAVPLHYYDDDEEVDDD
LIRPFLRSCSSHKGLLPVVGSKRGDNQFRFQADGSSKWLCMDDRVDYGQADYAIQGSEPW
LDDAATVWSPPRNTTTFNLGTGSSFLSKGSLDSHSTGRECFTEDNNFWASPVASIECSKS
SHRPSEFDSPASTFSSAFFVSKRNFKHCRDDGFDLSAGEVEKDIFNFDDMRYSSPQEDIS
FSSHMVASSFLKGNGRCKKNIRNSQIDSVLFPQQCDFLNETERTCSESNGKHKTFVPVAA
PHHVSSSFYADGEKSKIAQCSLQDKHPRRSRSAPPSYRGKKKFFALTSWTTIKSGKSCYK
ALHNAPTLQAIWCAEDSHLKHLQKSSGVDHLSQNEGPAIDSQSKSRHDKKKIIDKAEISD
YEGEAAHWLDVYETDSGVTSKENQGALDFGGKWRNECHRTTSMENPDDHTNQDSILDISS
GILHLLGDSLLPKSITKRCLEDSKVLQQVDKKFIPVVVGGILAIIDQHAADERIRLEDLR
GKVLSGEMKTVTYLDAEQELVLPEIGYQLLNNYFEQIQKWGWVCNFHAQSSVSFRKSLNF
LHNQRSVATLTAVPCILGVNLTDVDLLEFLEQLADTDGSSVIPPAVLRVLNFKACRGAIM
FGDALLPSECSLIVEELKRTTLSFQCAHGRPTTAPLVNLLVLHKQIAKLGNWNHGSSGSW
HGLSRHRPSLERAAQRLSSKGGQS
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtatcaaggcattgccggaatctgttcggagttctatgcgttcgggcatcatt
ttgtttgacttgacgagggttgtagaagagctggtgttcaacagccttgatgcagatgcc
acaaaggtgattgtagcgataaatgtcgggaccaactacattaaagttacagacaatggt
tgtggtatcactcgggatggattggttttgttgggagaaagatatgcaacttctaagttt
gagctgctggctgatatgaacactgttccagaaagctttggctttcgcggggaagcccta
agctcaatttctgacgtttctttgttggaagttgttacaaaggctcatggaatgccgaac
ggctaccgcaaggtcataaagggttgcaaatgcttgtatctagggattgatgatgataga
caagatgttggcacaactgttgttgttcgagatttattctacaaccaaccagttcggagg
aggcatttacattctagccccaaaaaggttctgcactccgtcaaagaatgcatactgaga
attgctcttgttcacctgggaacctgcttcaaaataattgatattgagagcggtgatgag
attctttgcttgtatccttcatcgtcccctttgcccctattgatgagtggttttggaact
gaggtcaccagttctctacataagttggatgcatctgagggtgaattaaggctttctgga
tacatatctggcccttatgaaactctctctgtgaaggccttccaatatttctatatcagt
tcaagatatgtatctagaggcccactacataaattgctgaatcaggtggctactatgcac
agctcttcagatttgttgaaggctgacattaggtctcaatgtggaaagcgaagcaggtgt
caggcatctccaacctacatattgaacttaacttgcccacgagctcagtatgatttaagc
tttgaacctaccaagacttgtgttgcattcaaggactgggatcctatatttactttcgtt
aagaaagccgtttcatgcttttggagtcagggaatgccttatggtgcacctatgtctgaa
gaagatgctatatggaaaggagctgatgccttagcaatgagtgatgatctcctggatgat
tatggactttcaaagaagaggcgcatgacactgtgccatcaggctgtcctttcctcaccc
ccacaaaagatgccaagagaagagccaaagcatatgccataccatggatattcaagtaac
cgctcacaaagaaaggctgtacagtccaaagagtatcgaatcgaaatggactttgactgt
ctgactgacaatttgctagaatttggtggcagatctctgcctgaaagaaaaacctccgta
ctacaagagagtggcaaccatctgggaaaacctaatagttacatttcttcagaggatatt
tacttacagaacaagtgtagtagggagctgtccagtgaatatgtggaccatctttcagat
gccaaatggaatccaaattctctgcaaactgactatggtacaaacaacagattagttgtg
aaagaaccatctgctgttcctcttcattattatgatgatgatgaagaggttgatgatgat
cttataaggccgtttctgagaagttgctcctctcacaagggtctgttacctgttgtggga
agcaaaagaggtgacaatcaattcagatttcaagctgatggttctagtaaatggctttgc
atggatgatagagttgattatggacaagctgattatgctattcaaggttctgaaccatgg
ctggatgatgctgcaactgtttggtcgcctcctaggaataccactaccttcaacttgggt
acaggctcttcctttttatcaaaagggtcacttgattcacattccactggtagagagtgc
tttacagaggataacaatttttgggccagtccagttgcatcaattgaatgttctaaatca
agtcatcggccttctgaatttgactcgcctgcctctacgtttagttctgcattttttgtg
tctaaaaggaacttcaaacattgcagagatgatggatttgacctttcagctggtgaagta
gaaaaggatatctttaactttgatgacatgagatatagctctccccaagaggacatctca
ttttccagtcatatggttgcctcctcattcctcaagggcaatgggagatgcaaaaagaat
attagaaactctcaaatcgacagtgttttgttcccacagcagtgtgatttcctgaacgaa
acagagcggacatgttccgagtccaatggcaaacataaaacttttgtacctgtagcagca
ccacatcatgtgtcatcatcattttatgccgatggggaaaagagcaagatagctcaatgt
agccttcaggataagcacccaagaagaagccgctcggccccaccatcttaccgagggaag
aaaaagttctttgccctaactagttggacgaccattaaatctgggaaatcctgctataag
gcacttcataatgcccctacattgcaagctatttggtgtgcagaagacagtcatctgaag
cacctacagaaatcatcaggtgttgatcacttgtcacagaatgaaggtcctgcaattgac
tcgcagtctaagtctagacatgataagaagaaaattattgataaagctgagatttcagat
tatgaaggggaggcggcccattggcttgatgtttacgagacagattcaggtgtcacctca
aaggaaaatcaaggtgcattagattttgggggaaaatggaggaatgaatgtcataggact
acaagtatggagaatcctgatgatcataccaaccaagacagcattcttgacatatcttct
gggatattgcaccttcttggtgattctctgttacccaagtctatcacgaagagatgcttg
gaggattctaaagttcttcaacaagttgacaagaaattcattccagttgtggttggcgga
atacttgctattattgaccagcacgccgctgatgaaagaattcgacttgaagatttgaga
ggaaaggttctctctggagaaatgaaaacagtcacctatctggatgcagaacaagaactg
gttttaccggagattggataccaattactaaacaattattttgaacagatccagaaatgg
ggttgggtctgcaacttccatgctcagagttcagtgtcctttagaaagagtttgaatttt
ttgcacaaccagcgctctgttgccacacttactgcagtgccttgtattttgggcgtcaat
ttaaccgatgtggatctcctagaatttctagaacagcttgctgatactgacggatcatca
gtaataccaccagctgttcttcgggtactaaatttcaaagcttgcaggggtgcaatcatg
tttggagatgcattactcccttcagaatgttctcttattgttgaagagcttaagcggaca
acattgtcttttcagtgtgctcatggtcgaccaacaaccgcacccctcgtgaaccttttg
gtcttgcataaacagattgctaagcttggaaattggaaccatggttcatctgggtcgtgg
catggtttgagtcgtcatagaccaagtcttgagcgggcggctcaacgcttaagttcaaag
ggagggcaaagctaa
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