Cynara cardunculus var. scolymus (artichoke): 112514675
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Entry
112514675 CDS
T05604
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112514675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112514675
03036 Chromosome and associated proteins [BR:
ccav03036
]
112514675
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112514675
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112514675
PBAF complex
112514675
GBAF(ncBAF) complex
112514675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SANT_DAMP1_like
ZZ
SH3-A_UBE2O
Motif
Other DBs
NCBI-GeneID:
112514675
NCBI-ProteinID:
XP_024977034
LinkDB
All DBs
Position
LG 6:3418241..3429714
Genome browser
AA seq
772 aa
AA seq
DB search
MPASSSETRNRWRKRKRGEQSRKPRPQPQHHHDEDEEDYEEEDDVDLDQQNPHPEFDDDL
SNSSDPTAATGAESEVISDGAVRISTFPSVIKQTVNQHHYSVIQIVARERACQTGDSSSG
GMNCPFLENISHGQLQALSAMPRDAPALTGGDSEGSFVITPPPIMEGRGVIKRYGSNRVH
VVPMHADWFSPTTVNRLERQAVPHFFSGKSMDHTPEKYMDCRNRIVAKYMENPARRLSTS
DCQAFLVGVDADDVTRVVRFLENWGVINYCAAPLNNHDPRNEGSYLTEDLKGELRVPATA
LRSIDSLIQFDKPRCRIKAADIYPELAVDSDENSDLDSRIRELLSENRCNHCSISLGIVY
YQSLKEIETLLCLNCFNEGAFVAGHSSLDFIKVDSTKYYGDLEADSWTNQETLLLLEGME
LFNENWIEIAEHVGTKSKAQCILHFVRLSIDETPLESIEVPAASNLPNGNGCGKPQSYAN
GKASIIEDPEFEDRLPFEKSGNPVMSQVAFLASAVGPRVAAACAHASLAALSEDDHLGAS
ENAGVVDGSVSENRMNSETINGRDDCTRADTRNPVQQKVEISGVQGARSQGDANVTCISS
EKMRNAVRAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVESLLIK
ECEQLERARQRVSAERGLLLSSQFGPGGGVTRPTGLPGVGPSLVNNAAAGSSRQQGSPAQ
PFISGFPSNHPQQPMFGLGPRLPLSAINPSSSSAASPHPMLRPVSGSRSGFE
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgccagcctcctcctcagaaactaggaacaggtggaggaagcggaagcgaggagagcag
tcccgaaaacctagacctcaaccccaacaccaccacgacgaggacgaggaggattatgaa
gaagaagacgatgtcgacctcgatcagcagaacccacatcctgaatttgatgatgacctc
agcaattcatccgatcccactgccgccacaggagcagagagtgaggtcatatccgatggc
gccgtacgaatctccacctttccttctgtgatcaagcagacggtaaatcagcaccattac
tcggtgattcaaattgttgccagggagagagcttgccaaactggagacagtagcagtggt
ggcatgaactgccccttcttggagaatatttcacacggccagctccaggcgttgtctgcc
atgcctagggatgctcctgctctgactggcggagactcagaagggtcttttgtaattaca
ccgcctcccattatggagggtcgtggtgttatcaagagatatgggtcgaatcgggtccac
gttgtgccaatgcacgcagattggttttcaccaacaacagtaaacaggctagagagacag
gcggttccacattttttctcagggaaatcaatggaccacactccagaaaagtacatggat
tgtcgtaaccgaattgttgctaaatacatggaaaatccagcaaggaggttgtcaacttct
gattgccaagcttttctagtcggtgttgatgctgatgatgtaactagagttgtgcgattt
cttgagaactggggtgtcatcaattattgtgctgctccgctgaataatcatgatcctaga
aatgagggctcgtatctgacagaggatttaaaaggagaattacgtgtgccggccacggct
ttgcgatctattgatagcttaatccaatttgataaacctaggtgtaggataaaagcagca
gatatatatccagaattggctgttgatagtgatgaaaactctgatttggacagcagaata
cgtgagctattatctgaaaatcggtgcaatcattgctctatatctcttggtattgtctac
tatcagtccctcaaagagattgagacactattatgcttgaactgcttcaatgagggggca
tttgttgctggtcattcaagcctggattttataaaggttgattccaccaagtattatgga
gatcttgaagcagatagctggactaatcaggaaaccttattgttgctggagggtatggaa
ctcttcaatgagaattggattgagattgctgagcatgttggcaccaagtcaaaagctcaa
tgtatcctccatttcgtacgcctctctatagatgagactcctctggaaagtattgaagtt
ccagctgcttcaaacttgcccaatggtaatggatgtggaaaaccacaatcgtatgcaaat
gggaaagcatccatcattgaagaccctgaatttgaagacagattgccattcgaaaaatct
ggaaatcctgtaatgtctcaggttgcctttttggcgtctgcagtgggaccgagagtggct
gcagcctgtgcccatgcatctttggcagcattgtctgaggatgatcatttaggtgcttct
gaaaatgcgggagtggtggacggatctgtgtctgaaaataggatgaattcagaaaccatc
aatggtagagatgattgcactcgtgcagataccagaaacccagttcaacagaaagtcgag
atctcgggagtacaaggcgccaggagccaaggtgatgccaatgtcacttgtatatcttct
gagaagatgagaaatgcagtacgagctggtcttgcagcagctgcaacgaaagcaaagctg
tttgcggatcatgaagaacgagaaattcaaaggctgtctgctaatattatcaatcatcag
ttgaagaggctagagttgaagctgaagcaatttgctgaagttgagagcttattaataaaa
gagtgtgaacaactggagagggcaaggcaacgggtatcggctgagcgaggtctgctcctt
tcctcccagtttggacctggtggtggtgtaaccagacccacaggcttgccaggtgtcggt
ccttcactggttaacaatgctgcagctggatctagccggcaacaggggtcacctgcacag
ccgttcatttcaggatttcccagtaatcacccacaacaacctatgtttggtctcggtcca
cggctgcccctttcagctataaacccgtcatcatcatccgccgcctctcctcatcccatg
ttgagacccgtgtcaggaagtagatctgggtttgagtag
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