KEGG   Cynara cardunculus var. scolymus (artichoke): 112514976
Entry
112514976         CDS       T05604                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082  ATP-dependent chromatin remodeling
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112514976
   03083 Polycomb repressive complex
    112514976
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccav03036]
    112514976
Enzymes [BR:ccav01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112514976
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112514976
   HDAC complexes
    Sin3A-HDAC complex
     112514976
    BRAF-HDAC complex
     112514976
    REST complex
     112514976
    SHIP complex
     112514976
    MiDAC complex
     112514976
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112514976
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112514976
  Chromatin remodeling factors
   NuRD complex
    112514976
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112514976
NCBI-ProteinID: XP_024977398
LinkDB
Position
LG 6:19287523..19299329
AA seq 468 aa
MVESSSVGGASLPSGPDGKKRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLH
RRMEIIRPFPAGPEDIRRFHSDDYVDFLASVTPDTLHDHTHARHLKRFNVGEDCPVFDGI
FEFCQASAGGSIGAAVKLNRQDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKV
HRRVLYVDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDIGANQGKYYALNV
PLNDGMDDDSFRGLFRPIVHKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCLR
YLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYFEYFGPDYTLHVE
PSPLENQNTPKDLEKIRNLLLEQLSRLPHSPSVPFQITPPITEAPEEAEEPMEKRPKPRI
WSGQEYDSDVDEEEKPRRQSFNANILTRDHARGNIKEEDMMDGDDAPS
NT seq 1407 nt   +upstreamnt  +downstreamnt
atggtcgagtcatcctctgtcggaggagcgtcacttccttcaggtcctgacggtaaaaaa
cgccgtgtctcctacttctatgaaccttcaatcggtgactattattacggccaaggtcac
ccgatgaaacctcatcgcatccgcatggctcacaacctcatcgtgcattactctcttcac
cgtcgaatggagatcatccgtccctttcccgccggtccagaagatatccgacggtttcac
tccgatgactatgtagactttctggcctccgtcacacccgatacccttcacgaccacaca
catgctcgtcacctcaagcggttcaacgtcggcgaggattgtccggtctttgacggcatt
tttgagttctgccaggcgtctgccggtggatccataggtgccgctgttaagcttaaccgg
caagacgccgacattgcggtgaattgggcaggagggttgcatcacgccaagaagtccgaa
gcatcagggttttgttatgttaatgatatcgtattgggtattcttgagcttctcaaagtc
cataggcgtgtattatatgtagatatcgacatccaccatggagatggggttgaagaagct
ttcttcaccactgacagggtgatgacggtctcatttcataaattcggggacttttttcct
ggtacagggcatattaaagacattggtgcaaatcagggaaagtactatgctctaaatgtt
cctttgaatgatgggatggatgatgatagcttccgtggtttatttagaccgattgttcat
aaagttatggaagtttatcagcccgatgcggtggttcttcaatgtggggcggattcattg
gcgggtgatagacttgggtgctttaatttgtcggtgaaaggtcatgcagattgtcttagg
tatcttagatcattcaacgttcctctaatggttttaggtggtggtggttatacaattcgt
aatgtggcccggtgctggtgttatgagacagcagttgcggttggggtcgagcctgaaaat
aaactgccttacaatgaatattttgagtattttggaccagactacactcttcatgttgag
ccaagtcctcttgagaaccaaaatactccaaaagatttggagaaaatcaggaacttgctg
ctcgagcaactgtcgagattaccacattctcctagtgtgccatttcagataacgccacct
atcacggaagccccggaggaggccgaggagccgatggagaaacgaccaaaaccgcgcata
tggagtggccaagaatacgattctgatgttgatgaagaagaaaagcctcgacgtcaaagc
tttaacgcgaatattcttacaagggatcatgcaaggggtaacataaaggaagaagatatg
atggatggggatgatgctccttcatga

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