KEGG   Cynara cardunculus var. scolymus (artichoke): 112515519
Entry
112515519         CDS       T05604                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112515519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112515519
   03036 Chromosome and associated proteins [BR:ccav03036]
    112515519
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     112515519
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     112515519
    COMPASS/SET1 complex (yeast)
     112515519
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_EML_2 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP NBCH_WD40 WDR90_beta-prop_4th Beta-prop_DCAF12 PQQ Beta-prop_VPS8 WD40_RFWD3 WD_LRWD1 DUF2963 MIOS_WD40
Other DBs
NCBI-GeneID: 112515519
NCBI-ProteinID: XP_024978160
LinkDB
Position
LG 7:complement(533193..544592)
AA seq 334 aa
MRNTSVSELDDEIIRSMSIGALFSDFVGKINALDFHRTADLLVTSGEDDFVRLYDIANGK
LLKTTHHKKHGADRICFTHHPSSVICSSTHNLDSGAESLRYLSMYDNRCLRYFKGHKERV
VSLCTSPVDDSFMSGSLDHTVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVSMEGGA
IKLFDSRSYDKGPFDTFLVGGDMAEIWDIKFSNDGKSMLLTTKSNNIYVLDAYNGEKRCG
FSVDASPNTTIEATFTPDGQYVVSGSGDGTLNAWSIPTRSKVASWDSHIGVASCLKWAPR
RVMFAAASMGILTFWIPKDPNSAAGNMEFTKDKF
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgaggaacacatcggtgtcggagctcgatgatgaaatcatccgcagtatgtcaattggg
gcactgttttcagatttcgtaggaaagataaatgcgcttgatttccatcgtactgcggat
ttattggtaacatcgggggaggatgattttgtacggctatatgacatagcaaatggcaag
ttactgaaaactacacatcataagaaacatggtgctgatcgtatatgctttacccaccac
cctagttctgtcatatgctcttcaacacacaatttggattcaggtgcagagtctctgcgt
tatctgtccatgtatgacaatcgttgccttcgttacttcaaggggcataaagaaagggtt
gtctccctgtgtacgtctccggtagatgacagtttcatgtccggttctcttgatcacact
gttaggatatgggatcttcgtgtgaatgcctgtcagggaattttacgtctacgaggtagg
cctacagttgcttatgaccaacaaggtcttgtctttgcagtatcaatggaaggaggtgct
atcaaattatttgattcacgttcgtatgataagggcccatttgacacctttttggtaggg
ggagatatggctgagatttgggacataaagttcagcaatgatggtaaatcgatgcttcta
accaccaaaagtaacaacatctatgttctagatgcatataatggtgagaagagatgtgga
tttagtgtggacgcttctccaaacacaacaattgaggctacatttacgcctgatggccaa
tacgtggtttcaggctctggagatggaacgttgaatgcttggagcatccccaccaggagt
aaggttgcgagttgggacagccacataggcgtcgcgtcgtgcttgaaatgggcgcctcgt
cgtgtcatgtttgctgctgcttctatggggatcctcacattctggatacccaaagatcca
aattcagctgctggaaatatggaattcaccaaagacaaattctga

DBGET integrated database retrieval system