Cynara cardunculus var. scolymus (artichoke): 112515939
Help
Entry
112515939 CDS
T05604
Name
(RefSeq) putative uncharacterized protein DDB_G0286901 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112515939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112515939
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112515939
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112515939
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112515939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
112515939
NCBI-ProteinID:
XP_024978688
LinkDB
All DBs
Position
LG 7:10265564..10274594
Genome browser
AA seq
627 aa
AA seq
DB search
MNPHHNSNQNPAAASAVQQVNSVINQQLCNGNAGGLYPNTRPIVAPSGFMNFPNQPFPLQ
NTMGQFPNGIGGFNPQQNFNPFPVNQFNPSQQQQGQFFAHNSMNPNAYNQNVGLPNEQVI
LQNTIQNICQLLQLQNRDYTQCPPVNFPMFQNQIANVMGHQNPGFHANQQFGLSNANGPV
QHANQGQQRFVSPMDGNVSKQLPNMGQQLQGNPFLPHAPGSVQTQQALATVTNFQHQIAQ
GMGPQNHSYPQNQLFGMANSNGPGQPVNQGQQRFVAPMMDVNASRQIASTGQQGSLLLPH
PSASVQKQNPCPTLANFEDNHGNIPANGNAKWTESQRKNFTGHKRNDLSHKGFKSQFQHA
KHVKEKFGTYNGNTNKEGNNNAAVNSGPRNSTNQIHSEKKYCVKYTEQEVKQWREARKKH
YPSSANVEKKCKKEQALSDVTNQGAMLRRQQLKEILTKQAELGCEVADIPSYYLSVSEKQ
IPRGKKHEREQYKKGKKFRNKRGTQLEDDDDRITKKTRPGGQDPHKPKQREPSLLQKLLT
RDIKRDKTHLLQVFRFIAANSFFTGERHESLRFPSVIVRETNADVASETTSSVCNVSEKA
VDVRCDDGKCNGEVLLEEPEEEGEITD
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctcatcacaattccaatcaaaatccagcagctgcttcagcagttcaacaggtt
aactcagtcattaatcagcaactgtgcaatggtaatgctggaggattatatcccaatact
aggccaattgtagctccatctggtttcatgaatttccctaatcagccctttcccttgcaa
aatactatgggtcaattccccaatggtattggtggattcaatccacagcagaattttaat
ccctttcctgtaaaccagtttaatccttctcaacagcaacagggccagttctttgcacac
aattccatgaatcctaatgcatacaaccaaaatgttggtttacctaatgagcaagtcatt
ctgcagaatacaatccaaaatatctgtcagcttctccaattacaaaaccgtgattatacc
caatgtcctcctgttaattttcccatgttccagaaccagattgcgaatgttatgggtcat
caaaatccaggctttcatgcaaatcagcagtttgggttgtctaatgctaatggccctgtc
caacatgccaatcaagggcaacagagatttgtttcgccaatggatggcaatgtttcgaaa
cagttacctaatatgggccagcaattacaagggaacccgtttttaccccatgctcctggt
tcagttcaaacacagcaagcacttgctactgtcacaaatttccagcaccagattgctcaa
ggtatgggtcctcaaaatcacagctatcctcagaatcagttgtttggcatggctaattca
aatggtcctgggcaacctgttaatcaaggacaacaaagatttgttgcaccaatgatggat
gtgaacgcttcaagacagatagccagtacgggtcagcaagggagcttgcttttaccccat
ccttctgcttcagttcaaaaacagaacccgtgccccactctcgcgaattttgaggacaat
catggaaacatacctgccaacggtaatgccaaatggactgagtctcaacgcaagaacttc
acagggcataaaaggaatgatctctcacacaagggattcaagtcccagtttcagcatgca
aaacacgtgaaagagaagtttgggacctacaacggcaatacgaataaagagggtaacaat
aatgctgcagtaaattctggtccacgaaattccaccaatcagattcattctgaaaagaag
tattgtgtgaagtacaccgagcaagaagttaagcagtggcgtgaggctcgtaagaagcac
tacccctcatctgcgaatgtggagaagaagtgtaagaaagaacaggcattgtctgatgtc
accaaccaaggagccatgttacgtcgccagcaattgaaggaaatattgacaaaacaggct
gagttgggttgtgaagttgctgatattccgtcatattatttatctgtctccgagaaacaa
atcccaagagggaaaaaacacgaaagggaacagtataagaaggggaagaagttccgtaac
aaaagaggaacacaacttgaggatgatgatgaccgaatcaccaagaaaacaaggccagga
ggccaagatccacataagccaaaacagcgggaaccatcgcttttgcaaaaacttttgact
cgagacattaagagagacaaaacccatcttttgcaggttttcaggttcatagcagccaac
tctttcttcactggggagcgacacgagtctttgagattcccatctgtaattgtgagagaa
acaaatgctgatgtggcttcagagacgacttcttctgtttgcaacgtttccgagaaggcg
gttgatgtcagatgtgatgacggaaaatgtaatggtgaagtgttgctcgaggaaccagag
gaagaaggagaaatcactgattga
DBGET
integrated database retrieval system
