Cynara cardunculus var. scolymus (artichoke): 112516124
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Entry
112516124 CDS
T05604
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112516124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112516124
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112516124
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
112516124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
112516124
NCBI-ProteinID:
XP_024978904
LinkDB
All DBs
Position
LG 8:complement(20210198..20227592)
Genome browser
AA seq
1678 aa
AA seq
DB search
MAQTTTEGASEIVEGVRFSFMTDEEVRKLSVLKITNPILLDSVGRPMPGGLYDPLLGPMD
EKAPCKSCRQQSFDCPGHCGHIDLVSPVYNPLLFDMLFNLLRRTCFFCHHFRVGKEEVDI
CTSKLKKIAKGDVAGAKNFVSNSDSKDIDLEDSDGSHVSSSTLFSGSQSDSSEQTQQEFW
TSIQDIEAKSVLKEFLANDSKSCKYCEAKNPKISKPTFGSFRMDMTVADAEKNYIRGYQL
GGIRYEEELQGGEEDKTSEVINVNEQSEDDRADTAGTNSFSATSSNRRNVKKKSSKVSTD
FKELKNNYSGSLLPSRVINIIKELWENEADLCSYICDIQQERLTRSSKSTSYSMFFLEAL
LVPPTKFRPAAVAGDSVMENPQTVLLGKVVQSNIALGNAHINKLEGSKIADRWRDLQQSV
NVLFDSKTATSQNLKNANTGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEI
GVPPYFALRLTYPERVTPWNVAKLREAIINGSDVHPGATHFADKVSTVRLLRDKYKRISV
SRKLPSSRGVAIQSKNGCNYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG
EKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGDTVRGLI
QDHIVSSVLLTMKDTFLSREMFHQLLYASGVFAGGSSRRGKISIADKGCFVEHVLPAVWK
PKPLWTGKQVITAILNHLTRGYTPCIVDNKVKIPEQYFLGKEAKQDKSKTNKRRKKEHAE
SEREAQKVDLKEVDETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGSDVAGLLLGAF
SRLFTNFLQFHGFTCGLDDLMVSPDCDKEMKLELEGEDVGEKVHRKFVNLENQRTGTREL
QLETEKIIRSNGVTATASLDNLMQTELRDKGSMISKKWLPKGLLKPFPQNCVSLMTISGA
KGSSVNFQQISFLLGQQELEGKRVPRMVSGKTLPSFSPWDFTSRAGGYIIDRFLTGLRPQ
EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFCYGED
GVDVHQTSFLNNVEVLRANREIVCXKLSEPLEFNWYIRELPKGLEDKVQSSRQKVKKENR
DDLLMLLRQKYLSSLAQPGEPVGVIAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ
EILMTAAANIKTPIITCPLLEGRSMEDAERLVEKVKKLTVAELMQSIEVSKLPLVIHNNR
PCRIYKLMVKLKQPKHVSLKNCQQTLRNVFLRALEDAIERHVALLSRINGIKSVKSSKAE
RSSEAEEDDDDAVVDKADEDDGGDDDDDDDIDETAEDLGAEFNKRKRQATDSVDYEDGSE
EEEAPSELESEADQANAGTGIGTDDETDGERPAEEQEKEEEKDADKANPKSEEFVERKFD
RAIFVEVKNLNLEVHFRFTNEPEILLAEVAQKAAKKVYVKGSGKLDQCQPVKYSVNVKQV
CWNQNHPELNKLKEKMKNSENKKKEDEGCLPCALQASGVELPAFWDMEEDLDVDHVYSNN
IYTMLNTYGVEAARTSIILEMKNVFGSYGVEIDYRHLSLIADHMTHSGGYRPMSRFGSIS
ESISPFLKMSFETASKFIVEAATHGLKDNLETPTARICLGLPVKVGTGSMEVMQKLDM
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccactactgagggcgcgtcagagattgtggagggtgtaagattcagtttc
atgactgatgaagaggtcaggaagcttagtgttttaaagattacaaatcccattttactt
gacagtgttggaagaccaatgccaggaggattgtatgatcctctgttaggcccgatggac
gagaaggcaccctgtaagtcgtgtaggcagcagtcatttgattgcccaggtcattgtggg
cacattgatcttgtttcaccagtatacaatcccttgctctttgatatgcttttcaaccta
ttacgaaggacctgcttcttttgccatcattttagagtgggtaaagaggaggttgacatt
tgcacttctaaactaaagaagatagcaaagggtgatgttgctggggctaaaaattttgtc
agtaattcggatagcaaagatattgatttggaggacagtgatggtagccatgtctcaagc
tctacactattctctggttcacaaagtgacagctctgaacaaacacagcaggagttttgg
acatctattcaggatatagaagcaaagtctgttttgaaagaatttttggctaacgatagc
aagtcctgtaaatactgcgaagctaaaaacccgaagatcagtaagcccacatttggatcg
tttcgaatggacatgactgttgctgatgcagaaaagaactatataagaggttatcagtta
ggaggtattcgatacgaggaagagctgcaaggtggcgaagaggacaagacttcagaggtg
ataaatgttaatgaacaatcagaagatgacagagctgatactgctggaaccaattcattt
tcagccacctcatctaacagaagaaatgtaaagaagaaaagttccaaagtgtccactgac
ttcaaagagctgaaaaacaactattcaggctctcttttaccatctagggtgataaatata
atcaaggaattgtgggaaaacgaggcggatctttgttcatatatatgcgatatccagcag
gagcggttaactagatcttccaaaagtactagttactccatgttctttttagaggccttg
cttgtaccccctacaaaatttcgtcctgctgccgtggcgggtgattctgttatggagaat
ccacagacggtgttactaggcaaggtggtacagtccaatatagcgttgggaaatgctcat
atcaacaaacttgaaggatcaaagattgctgatcgctggagggacttacagcagtctgtg
aatgttctattcgacagcaagactgccacaagtcaaaatctgaaaaatgcaaatactggg
atatgccagttgcttgagaagaaagagggaatctttcgccagaaaatgatgggaaagaga
gttaactttgcatgccggtccgtcatttcacctgacccttatctagcagttaatgagatc
ggagttcctccttattttgccttgagattgacttacccggagagagtgactccttggaat
gttgcaaaactgagggaggctatcattaatggttcggatgtccatccgggagcgacccat
tttgctgataaggtgtcaactgtcaggctactccgagacaaatataagcgtatttcagta
tcccgaaagttaccatcttctagaggcgtggccatacaatccaaaaatggctgtaactac
gaatttgagggtaaagttgtgtatcggcacttgcaggatggagatattgttcttgtgaac
cggcagcccacacttcacaagcccagcataatggcacatgtagttcgagtactgaaagga
gagaaaactcttcgaatgcattatgcaaattgcagttcctacaatgcggattttgacgga
gacgaaatgaatgttcatttgccgcaagatgagatctctcgtgcagaagcctacaacatt
gtgaatgcaaacaatcagtatatagttccaacaaggggagatactgttagaggcttaatt
caggatcatatagttagttctgtacttctcacaatgaaggatacattcttaagccgtgaa
atgttccatcaacttctgtatgcttctggcgtgtttgctgggggaagttcacgacgtggt
aaaatttctatagctgataaagggtgctttgtggagcatgtacttccagcagtgtggaag
ccgaagcctctttggactgggaagcaggtcataacagcaatattaaatcatttgactaga
ggttatacaccttgtattgttgataacaaggtgaagatcccagagcagtatttcctagga
aaggaggccaaacaggataaaagcaaaaccaataaacgtcgaaagaaagaacatgcagaa
tctgaaagagaggctcagaaagttgacctaaaagaggttgatgaaaccaggttgttgatt
tggaagaatgagcttgtgtgtggtgttatagacaaagctcagtttggcaagtatggtttg
gttcatactgtgcaagagctatacggatctgacgttgcaggacttctgcttggagctttt
agtcgattattcactaattttctacagttccatggatttacttgtggtttagacgacctc
atggtgtcgccagattgcgacaaagaaatgaagttggaacttgaaggtgaagatgtaggt
gaaaaggttcatcgcaaatttgtcaacttggagaaccaaagaactggcacaagagagctg
caactggaaactgagaaaataatacgaagcaacggtgtgacagccaccgcaagcttggat
aatctcatgcagacagaactgagggataaaggttctatgattagcaaaaaatggttgcca
aaaggattgttaaaaccttttcctcagaactgtgtttcccttatgacaattagtggtgct
aaaggtagttcggtcaactttcaacaaatatcctttctacttggtcaacaagagttggaa
ggcaaaagagtgcctcgaatggtttcagggaagactttacctagcttttcgccttgggat
ttcacttctagggctggtggttatattatcgatcgttttttaactggtcttcgcccacaa
gagtattatttccactgcatggctggccgggaagggttggttgatacggcagtcaaaacc
tcacgcagtggatatctacagaggtgccttataaagaatcttgagagcctgaaagtctcc
tatgattacacagttcgtgatgctgatggctccattgttcaattttgttatggtgaagat
ggggtggatgtgcatcaaactagctttcttaacaatgttgaagtgctgagagctaatcga
gaaatagtatgcmaaaaattaagtgagccacttgaattcaattggtatattcgagagttg
ccgaaaggccttgaagataaagttcaaagttccagacagaaggttaagaaggagaaccga
gatgatttgttgatgcttctaagacaaaagtatctctccagtcttgcccagccaggagag
ccagttggtgtgattgctggtcaatcggttggtgaaccatcgacccaaatgacgctcaac
acttttcatcttgctggacgtggtgagatgaatgttaccctcggtattccacgtttgcaa
gagatcttaatgacggctgcagctaacataaagactcccatcataacatgccccctgcta
gaaggcagatcaatggaagatgctgagagacttgtggaaaaagtaaagaagctgacagtt
gcagaacttatgcagagtattgaagtctcaaaattgccacttgtaattcacaacaatcga
ccctgcagaatatataagcttatggtgaagctcaaacaaccgaaacatgtatcactaaag
aattgtcagcaaaccctcagaaatgtttttctaagggcattagaggatgcaattgaaaga
catgttgctttgctatcccgaattaatggaatcaaaagtgttaagagctcaaaagcggag
cgttcaagtgaggcagaggaagatgatgatgatgctgttgtggataaagcagatgaagat
gatgggggcgatgatgatgatgatgatgacatagatgaaacagccgaggatcttggtgca
gagttcaataaaaggaaacgtcaagctacagattcagtggattacgaggatggttctgaa
gaggaggaggcaccctcagaacttgagagtgaagctgatcaggccaatgctggtactgga
atcggaactgatgatgaaacagacggagaacgcccagcagaggaacaagaaaaagaagaa
gaaaaagatgcggataaagcaaaccctaaatctgaggaatttgtggagagaaaattcgac
agggcaatatttgtggaagttaagaatttgaatcttgaagtccatttcaggtttacaaat
gaaccagaaattctgctggcagaggttgcgcagaaggctgcaaagaaagtttacgtcaag
ggctctggaaaacttgaccaatgccaaccggtcaaatacagtgtaaacgtaaaacaagtc
tgttggaatcaaaaccacccagaactcaacaaacttaaagaaaaaatgaagaactcggaa
aataagaagaaagaggacgaagggtgtttaccgtgtgcattgcaggcttctggagtagaa
cttcctgcattttgggatatggaagaagacctcgatgttgaccatgtttattccaacaac
atatacaccatgctcaacacttatggagtagaagctgccagaaccagcatcatattggaa
atgaagaacgtctttgggagttatggtgtcgagattgattataggcacttgagccttatc
gccgatcacatgactcattctggtgggtacaggcccatgagtagatttggcagcatatcg
gaatcgatatctccttttcttaagatgtcatttgagactgcatccaagtttatcgtcgaa
gctgcaactcatgggttgaaggataacttggagacaccaacggctaggatctgcctcggt
ttgccggttaaagtcggtactggttcgatggaggtgatgcagaaattggatatgtaa
DBGET
integrated database retrieval system
