Cynara cardunculus var. scolymus (artichoke): 112516132
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Entry
112516132 CDS
T05604
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112516132
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112516132
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_long
PPR_3
PPR_1
Motif
Other DBs
NCBI-GeneID:
112516132
NCBI-ProteinID:
XP_024978919
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All DBs
Position
LG 8:complement(21613474..21618620)
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AA seq
785 aa
AA seq
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MPTSLSILRSLSTYLPNHRHPRLLICTTCSLLNKNQPPNPPRISLFHTRSPDLSSVNNFV
DQLACEDENLDFDKETKVFTFDASFGTSSVDSKNLNVSPSLDVKELDELPEQWRRSKLAW
LCKELPSHNPATVIRILNAQRKWVNQEDMTYLAVHCMRIRENETGFRVYKWMMQQHWFRF
DFSLATKLADYMGKERKYLKCRDIFDDIINHGLVPTEYTFHILIVSYLSSSNRGCLDEAC
AIYNRMIQLGGYSPRLSLHNSLFKALLSKPNDSPKQYVNQAEFIFHQMVTSGFKIHKDIY
GGLIWLHSHQDKIDMERIVSLRSEMQLAGFEESKEVLVSVLRACSKDGDIEEAEKTWTKL
VSSTDTIPSLAFVYKMEVYARIGEHMRSLEVFRGMQEHSGSASTVAFHKIIEVLCKAHTT
ELAESLMKEFIGSGKKALMPSFINLMEMYLTLGMHDKLEYYFFQSFEKCRPNRTIYNIYL
KSLVHSGSLDKAEEILRQMQSDETVGVDTKSCNTILRGYLDGRENVKAEQIYGLMREKKF
QIEPALMEKLEKVLRANEEAVKNPIILKLSKEQREALVGLLLGGLQIESDEQGKNHKLVF
KFNEDSGVHKVLKRHIRNQYHKWLDSSKKQDGNEDKSCQFTTISHSYFGFYADQFWPQGQ
PVIPKLIHRWLSPRVLAYWYMYGGYRTSSGDILLKLRGSEDGVDRIVKTLGKKSLSCKVK
RKGRFFWIGLLGSNSTWFWKLVDPYIVGDLKDLLKPENISSDLKEEARTINFDRSDSDYS
EDDIT
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatccctatccatccttcgttcactctccacctacctccctaaccaccgccac
cctcgcctcctcatctgcacgacttgctcccttcttaacaaaaaccaaccacccaaccca
cctcgaatttcgctatttcatactcgctcaccagacctatcttcagtcaataatttcgtc
gaccaattggcgtgcgaagatgaaaatttggattttgacaaagaaaccaaggtttttaca
tttgatgcctcttttgggacgtcaagtgttgattccaagaatttgaatgtatctccatcc
cttgatgtgaaggaattggatgagctgcctgaacagtggaggaggtctaagttggcgtgg
ttgtgtaaagagctcccgtcgcataacccggctacggttattagaatactgaatgctcag
aggaagtgggttaatcaagaagatatgacttatctagctgttcattgtatgcgaattcgt
gaaaatgagaccgggtttagggtgtacaaatggatgatgcaacaacattggtttcgtttt
gatttctctcttgctaccaagctagcagattacatgggcaaggagcgaaaatacttgaaa
tgtcgggatatattcgatgatataattaatcatgggttagtgcctacagaatacactttt
catattctgatagtttcctatcttagttcatccaatcggggttgtttggatgaagcatgt
gctatctacaatcgaatgattcaattaggaggttatagtccgcggcttagcctgcacaat
tctcttttcaaagcacttctgagcaaacccaatgactctcccaaacaatatgttaatcag
gcagaattcatatttcatcagatggtaacatctggattcaagattcacaaggatatttac
gggggtcttatttggctgcacagccatcaggataagatagacatggaaagaattgtatca
ctaagatccgagatgcagttagctggatttgaggagagtaaagaagttcttgtgtctgtt
ttgagagcttgttccaaggatggggatatagaagaagctgaaaagacttggacaaaactt
gttagctctactgataccattccttccctagcttttgtgtataaaatggaagtctatgca
agaattggagaacacatgagatcattggaggtatttaggggtatgcaagagcattctggt
tcagccagcactgtggcatttcataaaattatagaagtattgtgtaaagcgcacactaca
gaacttgccgagtctctcatgaaagagttcattggaagtggtaagaaggcattaatgcca
tcgtttataaatttaatggaaatgtaccttacattaggcatgcacgataagttggagtat
tatttctttcagtcctttgagaaatgtcgtcccaatcgtaccatctacaatatatatctc
aaatcactggtacattctggcagtcttgataaggctgaggagatattacgccaaatgcaa
agtgatgagactgttggcgttgataccaaatcttgcaacactattttaagagggtactta
gatggtagagagaatgtgaaagcagaacagatatatggtttgatgagggagaaaaagttt
caaattgaacccgctttaatggaaaagctggaaaaggttttacgagcaaatgaagaagct
gtcaagaacccaataatcctgaagctcagtaaagaacaacgagaagctctggtgggattg
ctgttaggtggtctacagattgaatcagatgaacaaggaaagaatcataagctcgttttc
aagttcaatgaagactctggtgtgcataaggtcttaaagagacatatacgcaaccagtac
cacaagtggttggattcatctaagaaacaagatggcaatgaggataaaagttgccagttt
acaacaatctcacactcttatttcgggttttatgcagaccagttctggccacaaggtcag
cctgtaattccgaaactaatccatcgctggttgtcacctcgagttcttgcatattggtac
atgtatggaggatacagaacttcctctggagatatcttattgaagcttaggggaagtgaa
gatggtgttgatagaattgttaaaaccttagggaaaaagtcattgagttgtaaggttaag
cgaaaggggagattcttttggataggtttacttggaagcaattcaacatggttttggaaa
ttggtggatccatatattgtaggggatttaaaggatcttctaaagccagaaaacatatcc
tctgatctaaaagaagaagcccgaactattaactttgatagaagtgattccgattatagt
gaagacgacatcacatag
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