Cynara cardunculus var. scolymus (artichoke): 112516134
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Entry
112516134 CDS
T05604
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112516134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112516134
03110 Chaperones and folding catalysts [BR:
ccav03110
]
112516134
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112516134
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112516134
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
112516134
Messenger RNA biogenesis [BR:
ccav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
112516134
Chaperones and folding catalysts [BR:
ccav03110
]
Heat shock proteins
HSP60 / Chaperonin
112516134
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
112516134
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112516134
Exosomal proteins of other body fluids (saliva and urine)
112516134
Exosomal proteins of breast cancer cells
112516134
Exosomal proteins of colorectal cancer cells
112516134
Exosomal proteins of bladder cancer cells
112516134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CFAP141
Motif
Other DBs
NCBI-GeneID:
112516134
NCBI-ProteinID:
XP_024978921
LinkDB
All DBs
Position
LG 8:complement(25167912..25174402)
Genome browser
AA seq
607 aa
AA seq
DB search
MASITPLSSVGSFASPSSKTNKTMTNSFETLSSFSSVSSSSLGHGRRNVVLQKRCSLKVK
AMAKDIYLNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK
EVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPIQITR
GIERTTKALVEELKLMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEE
GKSAENSLYVVEGMQFDRGYLSPYFVTDSEKMSVEYENCKLLLVDKKITNARDLVSVLED
AIKGGYPILIIAEDVEQEALATLVVNKLRGALKIAALKAPGFGDRKSQYLDDIAILTGGT
VIRDEVGLTLENAGSEVLGLAAKVVLTKDTTTIVGDGSTQELVNRRVAQIRNLVEAAEQD
YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
LRLAAKVDAIKSTLDNDEQKVGAEIVRRALGYPMKLIAKNAGVNGSVVIEKVLSSDNLKF
GYNAATGTYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLTSDAVVVEIKEPEPMPTGSPM
DNSGYGY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcatctatcactcccttgtcttccgtcgggtcttttgcatctccaagcagtaaaacg
aataagacaatgacaaattcgttcgaaactttgtcttcattttcttctgtatcttcaagt
tctctcggacatgggaggcggaatgtagttctccagaaaagatgttctctcaaggttaag
gcaatggccaaagatatctatcttaacaaggatgggtctgcgattaaaaagctacaggct
ggtgtcaataagcttgcagatttagttggagttactttgggtccaaaagggcgcaatgta
gtgttagagagcaagtatggttcaccaaaaattgtgaatgatggtgtaaccgttgcaaaa
gaggttgaattggaagatcccgttgagaacattggtgccaagttggtgaggcaagcggct
tcaaaaacaaatgatttggctggtgatgggacgacaacatctgttgttctagcacaaggc
ttgataactgagggtgtaaaggtggtggcagccggtgctaacccgattcagataacaagg
ggaattgaaagaaccactaaagcccttgttgaagagcttaagctaatgtcgaaagaagtt
gaagacagtgagctggcagatgtggctgcagtaagcgcaggaaacaattacgaaattgga
aatatgattgctgaggcaatgagtaaggtggggaggaaaggtgtagtgactcttgaagaa
ggaaaaagtgctgagaacagtttgtatgttgtggaaggcatgcaatttgatcgtggttac
ctttctccatattttgttaccgacagtgaaaaaatgtccgttgagtatgaaaactgcaag
ttgcttctggttgataaaaagataacaaatgcaagggacttggttagtgttttggaagat
gctataaagggaggatacccgatattgattatagcagaggatgttgagcaggaagctctt
gctactctagtggtaaacaagctacgaggtgccctaaagattgccgcactcaaggcacct
ggatttggtgatcgcaaaagtcaatatcttgatgatattgctattctaaccggaggaacc
gtaatcagagatgaggtcggcttaaccctcgagaatgccgggagtgaggttttaggactt
gccgcaaaggtggtgctgactaaggatacaacaaccattgtcggcgatggcagcacccaa
gagttggtaaatagacgggttgctcagattagaaacctcgttgaggctgctgaacaagac
tacgaaaaagaaaaactaaatgaaagaattgccaaactatctggcggagtcgctgttatt
caagttggggcacaaacagagacggaacttaaagaaaagaaactgagagttgaggatgcg
ctcaatgcaacaaaggcggcagttgaggaagggattgtagtggggggaggatgcactcta
ttgcgccttgctgcaaaggtcgatgctatcaaaagtacccttgacaacgatgaacagaaa
gttggagccgaaattgttaggagggcacttggctatccaatgaagttgatagcaaagaat
gctggtgttaatggaagtgtcgtgattgagaaggtcttatctagtgacaatctcaaattt
ggttacaatgctgcaaccgggacctatgaggatctaatggctgctggcattatcgatccc
acaaaggtggtgagatgttgcttggagcatgcatcatcagttgcaaagaccttccttaca
tcggatgctgtggttgttgagatcaaagagcctgaacccatgcccactggaagccccatg
gataactcgggttatggttactga
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