Cynara cardunculus var. scolymus (artichoke): 112516511
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Entry
112516511 CDS
T05604
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112516511
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112516511
microRNA pathway
RISC loading complex
112516511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
DND1_DSRM
ResIII
dsrm
Cas3-like_C_2
PAZ
Motif
Other DBs
NCBI-GeneID:
112516511
NCBI-ProteinID:
XP_024979352
LinkDB
All DBs
Position
LG_8
Genome browser
AA seq
1631 aa
AA seq
DB search
MGNISEDINGVGALEALAINDPISIGGNQGDEGSSMEETQLQKTEKDPRTIARKYQIELC
DKALVENVIVYLETGCGKTHIAVLLIYKMRCLMKKPRKDICIFLAPTVALVEQQAKVIKD
SIDVKVGIYCGSSNRLKFHRDWEQEMEQFEVFVMTPQILLHNLSHCFIKIENIALLIFDE
CHYAQVESDHPYAEIMKIFYKPDVAKLPRIFGMTASPIFGKGASINSLETLLHAKVYTVK
DREELDQFVSSPIVNVYYYGPTPSNSPCPHASYSGRLESIKAQCMSTLLTKIEDSTVLKN
TKRLLQRLHDNLLFCLENLGLWGALQACRILLKGDLFERNAVIEVNDQCNDDILCGSYLS
QVAAYFAAECKKDCPVEANGTEADLSSVDALGVPFFSLKLLRLVGILSSFRAQPDMKCII
FVNRIITARSLAYVLHQLRFLSAWRCSYLVGVHSGLKNMSRKTTNAILEKFRSGELNLLV
ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDRGSQRELNLIQN
FCEDEAQMNNEITSRTSTVEYVDFEEKVYRVDSTGATIGSGSSVSLLHRYCSKLPHDEFF
NPKPWLYYFDDAEGTVCHIILPPNAPIHQIISSPQPSREAAKKDACLKACQQLYELGALT
HYLLPDDEVDDNNEDDSDSDGDDEESSRRELHEMLVPSALRERWIKVERKKVSLSSYFIK
FSPSPADRLYKEFGLFLKAPIPQEAERMKLDLQLARGRSVMTEIVPCGASAFSDNEIVLA
EWFQEMWLKAIIDKSEFVKDFVQLGKDDVSSPISTFYLLLPVIVNKYRGSMTVDWKLITK
CLSSPIFRTPKDNTCDRTSHMNNCLYLSNGPTKIDDILNSLVYVPCKDTFYFVSGLFPEK
DAFSLFKEETNYANHFAQAFGVKFLHPYQPLLKAKQLFRLDNLLRKRGSAEPREKEEHFV
ELPPEICVLKVIGFSRDIGSSLSLLPSVMHRLESNLVAIELRRRLSASFSEGSEVSAQRV
LEALTTERCNERFSLERLEVLGDAFLKFAVGRHLFVLHNSLDEGQLTRKRSNMVNNSHLF
KLALSNNLHVYVRDQSFEPSHFYPFGRRCSVRCTDSTQVEIHSSHESNLKTGENTEVRCD
KGHHWLQKKTVADVVEALVGAFIVDSGFKAAIAFLKWIGIQVDFKDSHVAKICHSSKIFT
ALSAQIDIPALENLLGYQFHHKGLLLQAFLHPSYHNNYGGCYQRLEFLGDAVLDYLTTSY
LYSVYPNLKPGQLTDLRSLSVNNNSFARIAVNRSFYKFMLCDSSNLIQSMNKYAEFFKTS
ASENILAETVPCPKALGDLVESCVGAILLDSGFNLEVVWKIMISFLDPVMKFSALQLNPI
RELQELCQFYNWELTFPSVKKDGVFSVDAVVDGKEVCETACATNSNKKTAKRIASQKLYL
SLKEKGYKTKVKSLEEILKLSQKMEARLIGYDEIPSNIDVSFADHIEDLKSNEVRNISRE
VQSRPVNSAKSSRYIQRMVQPTPDVCNPSSDTGDSNSQATAGDGLRKSSAKSHLYEICAI
NCWKPPLFECFEEMGPAHLKQFAFKVTVTIEEASSTILECIGDHRAKKKDAAEFAAQGVI
WYLKKIGHLEK
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atggggaacataagcgaagacattaatggcgtcggagcgcttgaagctctggcgatcaat
gacccaatttcgattgggggaaatcaaggcgatgagggatcgagtatggaggagacccaa
ttgcagaaaactgaaaaggatccgagaacaattgcgagaaagtaccaaattgaattatgt
gacaaggctttggtggagaacgtcatcgtgtatctagaaacaggttgtggcaagactcac
attgctgttttgcttatctacaagatgagatgcctgatgaaaaagcctcggaaggatata
tgtatctttcttgctcccacagtagctctcgttgaacaacaagccaaggttataaaagat
tctatagatgtaaaagttgggatatattgcgggagttctaatcgtttgaagtttcaccgt
gattgggagcaggaaatggaacaattcgaggtatttgtcatgaccccacaaattttatta
cataatttatcacattgcttcatcaagatcgagaacattgcccttctgatatttgatgag
tgccattatgcacaagttgaaagcgaccatccttatgctgaaataatgaagatattttac
aaaccggatgttgcaaaactcccccgtatatttggcatgaccgcttccccaatatttggg
aaaggtgcttccatcaatagtctcgagaccttacttcatgccaaggtttatactgtcaaa
gacagggaagagcttgatcaatttgtgtcatcccctatagtcaatgtctattattatggc
ccaaccccgagcaattcaccttgccctcatgctagttattctgggagacttgaatcaata
aaggcccagtgtatgtcaactttgctcacaaagatcgaggattctacagttcttaagaac
accaaaaggttactccagcgtcttcatgataacctgctgttttgtctggaaaatctcggc
ctttggggagcattacaagcttgtaggattctgttgaaaggtgacctctttgagcggaat
gcagttatcgaggtaaatgatcaatgcaacgatgatattttatgtggcagttatctatca
caagttgctgcctacttcgctgccgaatgcaaaaaagactgccctgttgaagcaaatggc
accgaagctgatttatcaagtgttgacgctttgggagttccgtttttctcattgaagctc
ttacgacttgttggaattctttccagttttagggcacagccggatatgaaatgtattata
tttgtgaatagaatcataacagctagatcgttggcatatgtccttcaccaacttagattt
ttgtcagcatggaggtgcagttacctagtaggagtccactcggggctaaagaatatgtca
cggaaaaccacaaacgccattcttgagaagttccgttcgggtgagctgaatttgttagta
gcaactaaagttggagaggaaggacttgatatccaaacatgctgccttgttatacgattc
gatctcccggaaaccgttgctagttttatacaatcaagaggtcgagcacgcatgccacag
tctgaatatgcatttttggtggacagggggagccaaagggagttgaatttgatacagaat
ttttgtgaggatgaagcgcagatgaataacgaaataacttcacgaacatctacggtggaa
tatgttgattttgaggagaaagtatatagagtagattcaacgggtgccaccattggttct
ggatctagtgtttcattacttcatcgatattgctcaaaacttccacacgatgaattcttc
aatcctaagccatggctatattactttgatgatgctgaaggaacggtttgccacataatt
cttcctcctaatgctccgattcaccaaatcataagttctcctcaaccatctagggaagca
gcaaaaaaagatgcctgtttgaaagcatgtcaacagttgtatgaattaggtgccttgacc
cactatctcttgccggacgatgaagttgatgacaacaatgaagacgattccgattcagat
ggtgatgatgaggaaagttcaaggagagagcttcatgagatgcttgtaccatctgccctt
cgggaacgatggattaaagtggaacgtaaaaaagtgtctctcagctcgtatttcatcaaa
tttagcccttcacctgctgatagactatacaaagagtttggcctatttctaaaagcaccc
atccctcaagaagcagaaagaatgaaacttgacctccaattggcacgtggtagatctgta
atgactgagattgtcccttgcggcgcttcagcattttctgacaacgagattgtgctagct
gagtggtttcaagagatgtggctgaaggccataatagacaagtcggaatttgttaaggat
tttgttcaattaggcaaagatgatgtcagcagtccaatctcgacgttctacttattgcta
cctgtgatcgtaaataaatacagaggatcaatgactgtggactggaagctcattacaaaa
tgtttgtcatcaccaattttcagaactccgaaagataatacgtgtgatcgaacatctcat
atgaataattgcttgtatctttccaatgggcccacaaagatcgatgacattttgaatagt
ttggtatacgtcccttgcaaggatactttttactttgtttctggacttttccccgagaag
gatgccttcagtctatttaaagaagaaacaaattatgccaaccactttgctcaagcattt
ggagttaaatttttacacccataccagcctcttttgaaagcaaaacaactctttcgtttg
gacaacctgctgcggaagagaggaagtgcggaaccacgtgaaaaggaggagcactttgtg
gagttacctcctgaaatatgcgtactaaaagtcatcggattttcaagggacatcggaagt
tcactgtctttattgccttcagtcatgcatcgattagaaagcaatctcgtggcaattgaa
ctgaggcgtaggttatctgcttcattctctgaaggatcagaagtttctgcacaacgtgtt
cttgaagcacttacaaccgagagatgcaacgagcggttttctcttgaaagacttgaagtg
ttgggtgatgcattcctcaaatttgcagttggccgtcaccttttcgtattacacaactcg
cttgatgaaggacaacttactagaaaacgttccaatatggttaacaattcccatctgttc
aagctggcattatcaaacaatttgcatgtatatgtacgtgatcaatcatttgagccttcc
catttttatccttttggtcgaagatgttcagtgagatgcactgacagcacacaagtggag
atccattcttcacatgagagcaatttgaagacgggtgaaaacactgaagttagatgcgat
aaaggtcatcactggttgcaaaagaaaaccgtggcagatgttgtggaagcgcttgttgga
gcgtttatagtcgacagtggctttaaagcagcaatcgcatttctcaaatggatcggtatt
caagtcgacttcaaagactcacatgttgctaagatatgccattcaagcaaaatctttacc
gctctgagtgctcaaattgacattcctgcccttgaaaatcttttggggtatcagtttcac
cataaaggtcttctcttacaagccttcttacatccatcataccataataactacggtggc
tgctatcagagattggagtttcttggagatgctgtgttggattatttgaccacatcttat
ctttattcggtatatccaaacttgaagccgggtcagttgactgatttaagatcactatcg
gtcaacaataattcctttgcgcgtattgctgtaaatcgatctttctataagtttatgcta
tgtgattctagtaatttgatccagtctatgaataagtatgccgaattcttcaagacttct
gcttcagagaacattttggctgaaacagtaccatgccccaaggctcttggtgatttggtt
gagtcttgtgttggtgccattcttcttgattctggattcaatttagaagtggtttggaag
attatgatttcgtttctggatccagtcatgaaattctcagcattgcagcttaaccccatt
agagaacttcaagaactttgccagttttataattgggaattaacatttccttcggtaaag
aaagatggggtgttctcggttgatgcagtcgttgatggaaaagaagtttgtgagactgct
tgtgctaccaattccaataaaaaaaccgccaagagaatcgcttcccaaaaattgtatttg
tctttaaaggaaaaaggttacaagacgaaggtgaaatctttagaggaaatcttgaagttg
agccaaaagatggaggcgagattgattggatatgatgaaataccctccaatatagatgtt
tcatttgccgaccacattgaagacttgaaatcaaatgaagttagaaatatttcccgagaa
gtgcagtcccggcctgtaaattctgcgaaaagcagtcgctatattcaacgtatggtgcag
cccacacctgacgtatgcaacccttcttcagacaccggtgatagcaattcacaagcaaca
gcaggtgatgggttgcgaaagtcatcagcaaaatcacatttgtacgaaatttgtgctatc
aactgttggaaaccaccattgtttgaatgtttcgaagaaatgggaccagcccacctcaaa
cagtttgcattcaaagtgactgtaacgatcgaagaagcctcaagtacaatcttggagtgc
attggagatcatcgagctaaaaagaaagatgcagcggagtttgcagctcaaggcgtgatt
tggtacttgaagaaaattggacatttagagaagtag
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integrated database retrieval system
