KEGG   Cynara cardunculus var. scolymus (artichoke): 112516549
Entry
112516549         CDS       T05604                                 
Name
(RefSeq) UBP1-associated protein 2A-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112516549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112516549
   03041 Spliceosome [BR:ccav03041]
    112516549
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112516549
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112516549
Spliceosome [BR:ccav03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112516549
SSDB
Motif
Pfam: RRM_1 RRM_7 N6_Mtase DUF4778
Other DBs
NCBI-GeneID: 112516549
NCBI-ProteinID: XP_024979411
LinkDB
Position
LG 1:19695962..19703669
AA seq 445 aa
MVKVAARKPKVAKKPDNVNKKKIVKTKKKKNIAERSIIPKTSAIQAADDSSDSDGEDYSP
EQIQKLIEPYTKDQLIEFIINAAIANPSLYTRIRDAADSDVSHRKIFVYGLGWDTTKETL
TLAFKPYGEIEDCNVIIDRVTGKAKGFGFVQFRSRKGAMKALEEPKKKINNRMASCQLAS
LGPAVAGSMDNSNRKIYVSNVQPHADPERLRAFFSKFGEIETGPLGFDTSTGKSRGFALF
VYKNQEGFRKALEEPYKVFEGHQLHCQKAADGKNKGTATSAPVTVTTPVVQQPTPQMLAA
VAATQNFGLFSQSHLGLNPMYGGLFSNPNAGFLAANPLYASGVLGQMGAVGGAPAGLGSY
YAGASHGLSMGVDNGSLLGEYGGATLPVIQGLGLQSSYPKKKVGAASASASGSRSQGAGG
SFSGYPSHLCPIFLHVLFINLLGRR
NT seq 1338 nt   +upstreamnt  +downstreamnt
atggtgaaagtagcagcgaggaagccaaaagtggccaagaagccagacaacgtcaacaag
aagaagatcgtaaagacaaagaagaagaaaaatattgcagaaagatcgatcatcccaaaa
acatcagctattcaagctgccgatgactcttcggattctgacggagaggactactcaccc
gaacagatccagaagctcatcgaaccatacactaaggatcagttaatcgaattcatcatc
aacgctgcgatagcaaacccttcgctctacacacgcattcgtgacgctgccgacagtgat
gtctctcatcggaagatcttcgtctacggccttggctgggacaccaccaaggaaacccta
actcttgccttcaaaccatacggcgaaatcgaggattgcaacgtcatcatcgaccgcgtc
accgggaaagccaagggtttcgggttcgttcaatttaggtcacggaaaggggcaatgaag
gctcttgaagaaccaaaaaagaagattaataaccgaatggcgtcgtgtcagctggcgtct
ttggggcctgctgtcgctggctccatggacaactccaataggaagatatatgttagtaac
gttcaaccccatgccgatccagaacgactgcgggcgttcttttccaagtttggggaaata
gagactggtccattagggtttgacacgtcaacaggaaagtcacgtggctttgctttgttt
gtgtataagaatcaagaagggtttagaaaggctttagaagagccttacaaggtattcgaa
ggacatcaattgcattgccagaaggcagctgacgggaaaaacaaagggactgcaacgtca
gcgccggtgacagttactacacctgttgtacaacaacctactccgcaaatgcttgctgcg
gttgctgcgactcagaattttggattgttcagtcagtctcacctgggattgaaccctatg
tatggagggttgttttcaaacccaaacgcagggtttcttgcagcaaatcctctttatgct
tcaggggttttggggcaaatgggtgctgttggtggtgcaccagccgggttaggtagttac
tacgctggtgcatcccacgggctgagcatgggtgttgataatgggtcattgctaggggaa
tatggcggggctactctcccagtgatacagggtttgggcctacaaagtagctacccgaag
aaaaaggtgggggctgcttcagcttcagcctctggttccaggtctcaaggtgctggtggc
tctttcagtggttatccatctcatttgtgcccaatctttttacatgtcctattcatcaac
ctattaggacgaagatga

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