Cynara cardunculus var. scolymus (artichoke): 112516944
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Entry
112516944 CDS
T05604
Name
(RefSeq) E3 ubiquitin protein ligase RIN2
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112516944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112516944
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
112516944
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112516944
Multi subunit type E3
ERAD complex
112516944
LMBR1L-GP78-UBAC2 complex
112516944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
CUE
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-C3HC4_3
zf-RING_11
zf-RING_5
zf-RING_16
E3_UbLigase_EDD
zf_RING_Vps8_fungal
zf-C3HC4_4
U-box_ZFPL1
PHD
RINGv
zf-HC5HC2H
zf-RING_Vps41
zf_RING_Vps8
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
112516944
NCBI-ProteinID:
XP_024979977
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Position
LG_1
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AA seq
603 aa
AA seq
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MKFSLYPMGVGYLSISAVCTMLSFIGLRYWTELSFMKLKSDGLMGENLLDPGVASRVLEL
LLDSYTTIALVVNFVLNVFILIVLSLKTIFFVELHATESRKLVERLVNYVIYKGTFLPLV
IPQTVVQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVYCVLLLVVTVD
AVWIRMCLLIYQTIPAEAIIAAPSPINFAPSIFLLLFFEPLSIAFETLQAILVHGFQLLD
IWLHHSAGNTTNSKITKLLDMSAAGSLWEWKSVILRNLGFFLDIMTFLMALGHYVHIWRL
HGMTFHLVDAVLFLNIRALLSAVLKRTRGFIKLRIALGTLHGALPDATSEEIQAYDDECA
ICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPLFVGTPEGNDVPRSGDV
SSDEQLARQLSSRLERQNVPGHTLPTGVIPNQIQTPLERDDWRGTGPDSGWLGFDGAGPS
TGMRSVGLGRVQMMMRHLAAVGETYAQTALEDTAWNLWPINPSQAASTSTSNNPSPSTIR
HRGHGGGSVIRTPPRVSDDDLSNILAMAETVREVLPHVPDELILRDLQRTNSVSVTVNNL
LQM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttctttgtatcccatgggtgtgggctatttatcaatttcggcagtctgtaca
atgttgagctttatagggcttcgatattggacagaactttcatttatgaagctaaaatca
gatggtttgatgggtgaaaatcttcttgaccctggagttgctagccgtgtactggaactg
ttgttggattcctataccacaattgcattggtggtcaattttgtcctcaacgtttttata
ctgatcgtcttgtctcttaagacaatattttttgttgagctgcatgcaacagaatctcgg
aaattggtggagcgactagttaattacgttatctacaagggaacatttcttccattggta
atcccgcaaacagtagtccaagcaggattgtggtcaacatggttgactgtactatgctct
ttgaagatgtttcaagctttagccagggatcgccttgaacggttgaatgcatctccttct
gcaactccctggacttacttccgtgtatattgtgttttattgctggttgtcactgtcgac
gcagtctggataaggatgtgtctactgatctaccaaacgatacccgctgaagcaattata
gcagcgccatcccctattaattttgcaccatctatatttttgttattattctttgagcca
cttagtattgcttttgaaacactacaggccatcttggttcatggatttcagctgcttgat
atatggcttcatcactcagcaggcaacaccacaaattccaaaataacgaagcttttggat
atgtcagcagcaggttcactgtgggaatggaagagtgtgatattacggaatctgggattt
ttcctcgatattatgacctttttaatggctcttggtcattatgtgcatatttggcggctt
catggcatgacattccatcttgtagatgcagtgcttttcctaaatatacgtgccttgtta
agtgcagttctgaagcgtaccagagggtttattaagttaaggatagccttgggaaccctt
catggggctctccctgatgcaacatctgaagagatacaagcttatgatgatgaatgtgcc
atttgccgggaaccaatggctaaggctaagaagctctcctgtaatcatctttttcacctt
tcatgccttagatcttggttagaccaaggtctaagtgacaattattcctgccccacttgt
cgaaaacccctctttgttggcacacctgaaggaaatgatgtacctcgttccggagatgtt
tcaagtgatgaacaactcgcccgtcagttaagctctagacttgaacggcaaaatgttcct
ggtcataccctgcctacaggtgtaattccaaatcaaattcagacccctttagaacgtgat
gattggagggggacaggaccagattcaggttggttgggattcgatggggctggtccatct
acaggtatgagatccgtggggttgggaagagtccagatgatgatgagacatcttgcagcc
gttggggaaacttatgctcagactgcccttgaagacactgcatggaacctgtggcctata
aatccctcgcaggctgctagcacatctacttcaaacaatccttctcctagtaccataaga
catcgaggacatggtggtggttcagtcattaggactcctccacgtgtttcagatgatgat
ttatcaaatatacttgcgatggctgaaaccgttcgcgaagtgcttccccatgttcctgat
gaactaatattgcgggatttgcagcgaacgaattctgtttcggttactgtgaataatctt
cttcaaatgtaa
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