KEGG   Cynara cardunculus var. scolymus (artichoke): 112517124
Entry
112517124         CDS       T05604                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112517124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112517124
   03041 Spliceosome [BR:ccav03041]
    112517124
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112517124
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112517124
Spliceosome [BR:ccav03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112517124
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 112517124
NCBI-ProteinID: XP_024980223
LinkDB
Position
LG 8:23361441..23366039
AA seq 455 aa
MDLAKKRKLEENGVVFPPDSAATTTTITTLSHDDLRKVIEPFTHEQLSQIVLTASLRHPD
VLDAVRSIADRDPTQRKLFIRGLGWETTSEKLRSLFATYGDLEEAIVILDKVTGKSKGYG
FVTYRHIDGALMALKEPSKKIDGRMTVTQLASAGFTNGASVTANLQTLDVSSRKIYVGNV
PYDMPGERLLAHFSSYGEMEEGPLGFDKITGKSRGFALFIYKNVDGARASLVDPVKTIDG
HQLNCKLANDNKRGNSGGMAAPPAAAVASAQVQGSGDRVKPEVIRVNLNQQSSMQGSYAS
QFGGGPGGIYGGNLGGLGLAGPGGISVYGGGGGQVPPLSHSQHPLNSNLGGGAGLSSFGS
NGGGPGLSTNGSQAPNSLGGGSGGFSSGLGGGGGGVGVSYGGGAGVGGGGSGFGGSGQRS
LYGLPPGSVRMSSGGYPESAHYSLSSGSAYQSQQQ
NT seq 1368 nt   +upstreamnt  +downstreamnt
atggacctcgcgaagaagcgaaagctcgaagaaaatggcgtcgtatttccacctgattcg
gcggctaccaccaccaccatcaccacactctcccacgacgacctccgtaaagtcattgaa
cctttcactcacgaacaactatcccaaatcgttctaacggcttccctccgtcacccggac
gtccttgacgccgtccgatcaatcgccgaccgtgatcccacccaacgtaagctatttata
cgcggccttggctgggaaacaaccagcgaaaaactccgatctctgtttgctacttacggc
gatctagaagaggcgattgtgattctcgataaagtgacgggaaagagtaagggttacgga
tttgttacgtataggcatatagatggggcgttaatggcgttaaaggagcccagcaagaaa
attgatgggagaatgactgttactcagcttgcttctgctggatttaccaatggagccagt
gtcacggcgaatttgcaaaccctagatgtatcatcaaggaagatttatgttggaaatgtg
ccgtatgatatgcctggagagaggttgctggctcatttttcatcgtatggtgaaatggag
gaaggaccattagggtttgataagattacaggtaagtctaggggttttgccctttttatt
tataagaatgtggatggagctagggcttcgttggttgatccagtcaagactattgatggg
catcagttgaattgtaaacttgctaatgataacaagagagggaattccggtgggatggca
gcaccaccagcagcagctgtggcgtctgctcaagttcaaggatcaggtgatagggttaag
ccagaagtaataagggtgaatttgaaccagcaaagttcaatgcagggttcatatgcatca
cagtttggtggcggacctggcggcatctatggtggaaatttgggtggattaggattagca
ggacctggtggtatttctgtttatggtggtggtggtggacaagttccacctttgagtcat
tcacagcatcccctgaattcgaatttgggtggtggagcagggttgtcttcatttggtagc
aatggtggtggtccagggttatcaacgaatgggagtcaagcaccgaattccttgggaggt
ggcagtggtgggtttagttctggtttaggtggcggtggtggtggcgttggtgtaagttat
ggtggaggggcaggggtaggaggtggtggcagtggttttggtggttcaggccagagatcc
ctttatggtttgccaccgggttcggtcagaatgagttctggaggttatcctgagagtgca
cattatagtttgtcatctggttctgcctaccaaagccaacagcagtag

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