Cynara cardunculus var. scolymus (artichoke): 112517263
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Entry
112517263 CDS
T05604
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112517263
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccav01002
]
112517263
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112517263
03036 Chromosome and associated proteins [BR:
ccav03036
]
112517263
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112517263
Peptidases and inhibitors [BR:
ccav01002
]
Metallo peptidases
Family M67
112517263
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112517263
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
112517263
BRISC complex
112517263
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
112517263
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
112517263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
112517263
NCBI-ProteinID:
XP_024980406
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All DBs
Position
LG 8:24534931..24543391
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AA seq
426 aa
AA seq
DB search
MSLTSVKMAEDVWLTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGALPQPRSDRQ
KDRVETNPEQLTAASVQAEKMTVEIGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
SGFIGLIFSCFNEDQYKVGRIQVTAFQSLDGKQNHVLRPVPISPIHKSSIIDLESSVSST
EHSLTNSGSTRVECLELDTGDSKAAAGASKGGGKSSALKGFFANADTNYTGRVGGNYPTG
NMDSAVVDIDPMDMSDSMQEAMHRSNMEMSGAEYIRKEVPLHVMPTLSLLNLESPLTSFS
DLQSVLYEEERTAYHQAIIQNMRDGKVHPLSFIHHTSTYQASICKLMEYCLSPAINSLQD
RISENEIRLRILASEAKILEKESTKGTGIDSSSSPRSVAQRGGGKDVYSPFERSVSGSSS
RSRRGS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaacgagtgtgaaaatggcggaggatgtgtggttaacgtgtctcactcatgca
ttgtccaccgagactgaagaaatcatggggcttcttctcggtgatattcagcactccaag
aatgggagtgtgactgccctgatttggggagcgttgccacaaccaaggtctgataggcag
aaggaccgcgttgagacaaatcccgaacagttgacagctgcatcagttcaggctgagaaa
atgacggtggaaattggaagaaccacacgagtgattggctggtatcattcacatccgcat
atcacagtacttccttctcatgttgatgtacggactcaggctatgtatcaactcctagac
tctgggtttatagggctgattttttcatgtttcaatgaagatcaatacaaggttggaaga
attcaagttactgcattccagtccttggatggaaagcagaatcatgtgttaagacctgtt
cctatatctcctatacataaaagttccattatagatctagagtcttcagtaagttccact
gagcattcactcacaaattctggctcaacacgggtagaatgtctagagcttgacactggt
gattcaaaagctgctgcaggagcttcaaagggcggaggaaaatcatctgccttgaaaggt
ttctttgcaaatgctgataccaactataccggaagagtaggagggaactaccctactggt
aacatggacagtgcagtagttgatattgaccccatggatatgtctgacagtatgcaagag
gcaatgcaccgttcaaatatggaaatgagcggtgcagaatacatcaggaaagaagtccct
cttcatgttatgccgactttatctcttctcaatctcgaatcacctttgacatcattctct
gatctacaatccgtgttgtatgaggaggagcggacggcataccatcaagcaatcatacaa
aatatgagagacgggaaagtccatccgctttctttcattcatcatacttcaacctatcaa
gcttctatctgcaaattaatggaatattgcttaagtccagccataaattctcttcaggac
cgtatatcagaaaatgagattcggctgcgtatacttgcaagtgaagcgaaaatcctcgaa
aaagaaagcacaaaagggacggggatcgattcaagttcttctcctcgaagtgttgcacaa
agaggaggtgggaaggatgtatacagtccttttgagagatcggtttccggttctagtagt
cgtagcagaaggggttcttag
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