Cynara cardunculus var. scolymus (artichoke): 112517606
Help
Entry
112517606 CDS
T05604
Name
(RefSeq) U-box domain-containing protein 13-like isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112517606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112517606
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112517606
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
U-box type E3
112517606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-RING_UBOX
zf-C3HC4_4
zf-Nse
Arm_2
MLKL_N
zf-C3HC4_2
Neurochondrin
zf-NOSIP
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
112517606
NCBI-ProteinID:
XP_024980714
LinkDB
All DBs
Position
LG 9:11049712..11055531
Genome browser
AA seq
644 aa
AA seq
DB search
MAEGGKSGLILKLIDIVNEISAISDYRCTVRKPFFNLARRLKLLSPLFEEIRDIKDSLPD
DSYRSLLSLMEALESAKELLRLGSEASKIYLALEREETMRKYQKVTARLEQDLDGISFEK
LDISDEVKEQVALVLAQFRRAKDRIDAPDAELSEDLSSLYNKGSDVVADPAVLRRLVEKL
QLTGIHDLTHESLTLHEMVTTSDGDPGETIEKMSMLLKRIKDFVQTENPNVDSPPGETSA
PTTSSGHETSVKNHKGTVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLAAGHGTC
PKTQQNLTSTALIPNYVLRSLIAQWCENNGMDPPQRSVRSSSACTPAERSMINVLLSKLK
SVSPDDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLTHLLTAPDSRTQEHAVTALLNLS
ICEENKGSIVSSGAVPGIVLVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLV
LLLSEGTQRGKKDAATALFNLCIYQGNKGRAVRAGVISTLMELLTDPQGGMKDEALAILA
ILSSHPEGKIGIGKADAVGVLVEFMGSGSPRNKENAAAVLVHLCSGDEKYLVEAQEMGVM
GVLVDLAHHGTDRGKRKAGQLLEKITRLTEKQKLLQQEMESNNN
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggagggaagagtggactgatattgaagctaattgatattgtgaatgagatt
tcggcaatatcggattatcgatgtacggtgaggaagccgtttttcaacctagcacgaagg
ttaaagcttttgagtccactgtttgaagagattcgtgatatcaaagactctcttcctgat
gattcttaccgatctttgctttcgttgatggaggctttggaatctgctaaggagttgctt
cgattagggagtgaagccagcaagatttatttggcgctggagagagaagaaaccatgaga
aagtaccagaaagttacagctcgtttggagcaagatttagatggcatttcttttgaaaaa
ctcgacatatcagatgaagttaaagaacaggttgcacttgttcttgctcagttcagaaga
gctaaagatagaatcgatgcaccagatgctgagttgagtgaagatctttcatccctttac
aacaaaggtagtgatgtggtggcagatccagctgtcttaaggagattagttgaaaaactg
cagctgacgggaatacatgatctcacacatgaatcactaacgttgcatgaaatggttact
actagtgatggtgatccaggagagacaatagaaaagatgtcaatgttactaaagcgaatc
aaggattttgtgcagacggagaatccaaacgtagattcaccacccggggaaacctctgct
ccaacgacttcaagtggacatgaaacttcagtgaaaaatcacaagggtacagttatacct
gatgatttccgttgtcctatatcacttgagttgatgaaggatcctgttatcgtctcaact
gggcagacttacgagcgctcgtgcatagagaagtggttggcagcaggtcacggcacatgc
cccaaaacacagcaaaatctgacgagtactgccctcatacccaactacgtattacgtagc
ctcatagcccaatggtgtgagaacaatggaatggacccaccacaacgttcggttaggtcc
tcttctgcctgcacccctgcagaacgttccatgataaacgttctcctctcgaagctcaaa
tccgtcagtcctgatgaccaaaggactgctgccggtgaaatccgcctccttgcaaaaaga
aatgccgataaccgtgtcgccattgctgaagctggcgccatccctcttctcacacacctc
ctgactgcaccagattcccgcacacaagaacatgcagtcaccgctctcctcaacctctcc
atttgtgaggaaaacaaaggtagcatcgtatcctcgggggcggtccccgggattgtttta
gtgctaaagaaaggcagcatggaagcacgagaaaacgcagccgccaccctcttcagcctg
tctgtaatcgacgaaaacaaagtaacaatcgggtctttaggagcaatcccgcctcttgtg
ttgctgttaagcgaaggaacccaaagaggaaagaaggacgctgcaaccgcattatttaac
ctctgcatatatcaaggcaacaaggggcgggcagtgagggcaggcgtaatctcgactctg
atggagctgttaacggacccacaaggggggatgaaagatgaagcattggcgattctggcg
atactctcgagccatccggaaggaaagatagggatcgggaaagcggatgcggttggagtg
ttggtggagtttatgggaagtgggtcaccaagaaacaaagagaatgcagctgctgttttg
gtgcatttgtgttcaggagatgagaagtatctggtggaggctcaagagatgggggtgatg
ggggtgctggtggatttggcacatcatggtacagacagagggaaaaggaaggctggacag
ttgttggaaaagataaccagattgacagaaaaacagaagttgttacagcaggaaatggag
tcaaataacaactag
DBGET
integrated database retrieval system
