Cynara cardunculus var. scolymus (artichoke): 112517648
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Entry
112517648 CDS
T05604
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112517648
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112517648
Transporters [BR:
ccav02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112517648
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC2_membrane_3
ABC_tran
AAA_21
ACT_13
R1_ABCA1
AAA_29
ABC2_membrane
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112517648
NCBI-ProteinID:
XP_024980780
LinkDB
All DBs
Position
LG_9
Genome browser
AA seq
1899 aa
AA seq
DB search
MEERTKGKKMNSSSGRQLKAMLRKNWLLKIRHPYITLAEVLLPLVVMLMLIAVRTQVDTK
IHPAQSYIKKETFVDVGKSYISPTFNQVLESLLASGEYLAFAPNTSDTRLMIDILSYKFS
LMKLVTKVYKDELELETYLKSNLYAACSEVKNCSNPKIKGAIVFHGQGPNLYDYSIRLNH
TWAFSGFPDVKNIMDINGPYVNDLELGLNQIPILQYGYSGFLTLQQVMDSFIIFYAQRKA
ANVVSDDTFDPSESPMSKYIVSNSLKIPWSQFTPSTIRLAPFPTREYTDDEFQSIIKDVM
GILXLLGFLFPISRLISYSVFEKEQKIKEGLYMMGLKDEIFHLSWFITYALQFAVSSGVI
TVCTMGTLFKYSDKSLVFMYFFLFGLSAIMLSFLISTFFTRAKSAVAVGTLAFLGAFFPY
YTVNDEAVSMVLKILASLLSPTAFALGSVNFADYERAHVGLRWSNIWRASSGVCFLICLI
MMVLDSLLYFAVGLYLDKVLHKENGMVYPWNFILPKSFWWNRNANKQFASSLEVNGDNQE
KCTSSQSTMEAISLDMKQQEVDGRCIQIRNLHKVYSSSKGKCCAVDSLQLTLYENQLLAL
LGHNGAGKSTTISMLVGLLAPTSGDALVFGRSILTDMDDIRKNLGVCPQYDILFPELTVK
EHLEIFANIKGVNEESMESSVTEMVDEVGLADKLNTYVSALSGGMKRKLSLGIALIGDSK
VVILDEPTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADVLGDRIAIMANGSLKCC
GSSLFLKHQYGVGYTLTLVKTSPGASAAADIVYKHIPSATCVSEVGTEISFKLPLASSAS
FEYMFREIESCMSKSDPHLISLEHEDCTDFGIESYGISVTTLEEVFLRVAGCDINDEECL
EGRTTVAVLDSTPSQTCNGYVEDKRSSSKFFGNYIVVVGLMLSAVGRACTLALAAALSFL
SFVGLQCCFPSVITRSTFWKHSKALLIKRGISARRDRKTIVFQLLIPAMFLFIGLLLLEL
KPHPDQPSITFTTSYFNPLLSGEGGGGPIPFDLSLPVAQEISHYIEGGWIQRFKESTYRF
PDPSKALEDAIEAAGPTLGPILLSMSEYLMSSFNESYESRYGAIVMDAQNDDGSIGYTVL
HNSTCQHAAPTFINLMNAAILRLATLNGNMTIQTRNHPLPMTQSQRLQRQDLDAFSAAIV
VSIAFSFIPASFAVAIVKEREVKAKHQQLISGVSILSYWVSTYIWDFISFLVPSSFAMLL
FYIFGLEQFIGSDSLFPTILILLGYGFAVASSTYCLTFFFSEHSMAQNVVLLVHFFTGIV
LMVISFIMGFIPATQDMNSFLKNFFRLSPGFCFADGLASLALLRQGMKIGSSSGYFGWNV
SGGSICYLAVEGVVYFLLTIGLEFFHPHQLTSFSILEFLRSFRRTGPTISDAYSEPLLRS
STDSASIDLDEDVDVKTERNRVLSGSIDKAIIYLRNLRKVFPGGRNHGKKVAVHSLTFSV
QEGECFGFLGTNGAGKTTTLSMLSGEVYPSDGTAFIFGQDMRLNPKAARQHIGYCPQFDA
LLEFLTVQEHLELYARIKGVPEYMLENVVMDKLVEFDLLRHATKQSFTLSGGNKRKLSVA
IAMIGDPPIVFMDEPSTGMDPIAKRFMWEVISRLSTRSGKTAVILTTHSMNEAQALCTRI
GIMVGGKLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLENLCQMIQERLFDIPSHPRTI
FGDLEVCIRGDDSITPEDASVTEISLSREMIILVGRWLGNEERIKTLTDPVGCGGAFNEQ
LPEQLARDGGLPLPIFSEWWLAKEKFSMIDSFVLSSFHGATSQGSNGLSVKYQLPRGEDV
SLADVFGLIERNRNQLGIAEYSISQSTLETIFNHFAANS
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacggacaaaggggaagaagatgaatagtagttcagggagacaactgaaggct
atgcttcggaagaactggcttctaaaaattcgtcatccttatatcactcttgccgaggtt
ctgcttcccttggtggtgatgctaatgttaatagccgtaaggacacaagttgatacaaag
atccaccctgctcaatcgtacattaaaaaagagacatttgtggatgtggggaagagctat
atatctccaacttttaatcaagttctggaatcattgttggccagtggtgaatatttggct
tttgcacctaacacaagtgatacaaggttgatgattgacattttatcatataaattttcc
ttaatgaagctggttacaaaagtatacaaagatgaattagagctcgagacttatttaaaa
tcaaatctctatgctgcttgcagtgaagtgaagaactgttcgaatccaaaaatcaaagga
gcaatagtgtttcatggtcaaggtcctaatttatatgactacagcattcgtctcaaccac
acatgggctttttccggatttccagatgttaaaaacatcatggatattaatggtccctat
gtcaatgacttggaactgggcctcaatcagataccaattctgcagtatggctacagcggt
tttctaactctccaacaagtcatggattcatttatcattttctatgcacaacgaaaggcg
gctaatgtagtaagtgacgacacctttgacccaagtgagtcgccaatgtccaaatatatt
gtgtccaactcactcaagataccgtggagtcaattcacgccatcaaccataaggctagct
ccgtttccaactcgtgaatatactgatgatgagttccagtccatcatcaaggatgtcatg
ggaatcctgkacttattggggtttctttttccaatctctcgcctaattagctattcggtt
tttgagaaggagcagaaaataaaggaaggcctctacatgatgggactgaaggatgagata
ttccatctttcttggtttattacgtacgctttacagtttgcagtttcatccggagtcatc
actgtttgcacaatgggcacactgtttaaatacagtgataagtcattggtattcatgtat
ttctttctgttcggactcagtgcgataatgttatccttcctgatctctactttcttcaca
cgagcaaaatcagctgtggcagttggaacacttgcttttcttggagccttctttccctat
tatacagtgaatgatgaagctgtttcgatggtcttaaaaatattggcttctttgctttca
ccaacagcatttgctttagggtcagtcaattttgccgattatgagcgtgcacatgttgga
ctccgttggagcaacatttggcgggcatcttctggagtgtgcttcttaatctgtctgatt
atgatggtgcttgactctttactgtactttgcagttggcctgtatctggataaggttctt
cataaggagaatggaatggtgtacccatggaacttcatcttgccaaaaagcttttggtgg
aacagaaatgcaaataaacagtttgcttctagtttagaagttaatggtgataatcaagag
aagtgcacttcatctcagtcgacaatggaagcgataagcttagatatgaagcagcaagag
gtggatggcagatgcatccaaatcaggaacctgcacaaggtgtatagtagcagcaagggg
aagtgttgcgctgttgattctttacagcttacattatatgaaaaccaactacttgcactt
ctaggacataatggtgctggaaagagcacaactatttccatgctcgttggccttcttgct
cctacttctggagatgccttggtttttggaagaagtatcttaacagacatggatgacata
cggaagaatttgggtgtttgtccccaatatgacatccttttcccagagttgacggtgaag
gaacatttggaaatttttgctaatataaaaggagtgaacgaggaatccatggagagcagt
gtaactgaaatggttgacgaagtgggattggcagataaacttaatacttacgtaagtgct
ctttctggaggcatgaaaaggaagttgtcccttggcatagcattgattggagatagtaag
gttgttattcttgatgaaccaactagtggaatggatccatactccatgcgattgacatgg
caacttatcaaaagaataaagaaaggtaggataatactgttaacgacacactcgatggat
gaagctgatgtacttggcgaccgcatagcaattatggctaatggttctttgaaatgctgc
ggaagttctctcttcttgaagcatcagtatggggttggttatactcttactttggtgaag
acttcgcccggggcatctgcagctgctgatattgtctacaaacatattccatcagcaaca
tgcgtgagcgaagttggaactgagatttccttcaagcttcctctggcatcctctgcttcc
tttgagtacatgtttagggaaattgaaagctgcatgtcaaagtcagatcctcacttaata
agcttggagcatgaggattgcacagattttggtatagagagttatggcatatctgtgacg
accttagaggaggtattcttgagagttgcaggatgtgacatcaatgacgaggagtgcctg
gagggaagaactactgttgctgtgcttgattctactccgtctcaaacctgtaatggttat
gttgaggataaaagatcaagttccaaattttttggaaattatatagttgtggttgggcta
atgctttccgcagttggtagagcctgtactcttgcccttgctgcagccttgagtttttta
agtttcgtaggtttgcaatgttgtttcccttctgtcattacgagatcaacattctggaaa
cattccaaggcattgctcataaagagggggatatctgctcgcagagaccggaagacaatt
gtttttcagttgttaattcctgctatgttcttgtttattggtcttctcctgctagaacta
aagccgcatcctgatcaaccgtccataaccttcacaacttcctacttcaatccactactt
agtggtgaagggggtggtggtcccattccttttgatctatctttgcctgtcgcgcaagaa
atttcacattatatagaagggggctggattcaaaggtttaaagagagcacatataggttt
cctgatcctagcaaagcattagaagatgctattgaggcagcagggccaactttggggcca
atccttctttccatgagtgagtacctgatgtccagcttcaatgaatcctatgagtcaaga
tatggggctattgtaatggacgcacagaatgatgatggtagtatagggtacacggttcta
cacaacagcacttgtcagcatgctgctccaacctttatcaatttaatgaatgcggcaatt
cttaggcttgccacacttaatgggaatatgaccatacaaacacgtaatcatccactgcca
atgacacaaagccagcgcctgcaacgtcaagacctggatgcattctctgcagcaattgtt
gtgagtatcgccttctccttcattcctgcttcattcgctgtcgctattgtgaaggagcgt
gaagtaaaagcaaagcatcaacaactaattagtggggtttccatattgtcgtattgggta
tcaacatatatttgggacttcataagcttcttagttccttcctcttttgcaatgcttctc
ttctacatctttggcctggaacagtttattggaagtgattctctatttcctaccatcctc
attctgttaggatacggttttgctgttgcatcttcgacatattgcctaacctttttcttt
tcggaacacagtatggcacagaacgtggtactgttggtccactttttcacggggattgtt
cttatggtaatatcattcattatgggattcataccggcgactcaagacatgaattctttt
ctcaagaacttcttcagactatctccaggattttgctttgctgatggactagcatcccta
gctttattacgtcaaggaatgaaaattggatcaagtagtggatattttgggtggaatgtc
tcaggtggatctatttgttatttggctgtcgagggtgtcgtttatttccttttaacaatt
gggcttgaattttttcatccccaccaattaacttcatttagcattttggagtttctaaga
agtttcagaagaaccggtcccactatttctgatgcatattctgaaccccttctgagatct
tccacagacagtgcttctattgatcttgatgaagatgtagatgtcaaaactgaacggaat
agggtcctttcaggttccatcgataaagctatcatctacttgcgtaatttgcggaaggta
tttcctggaggaaggaaccacggtaagaaagttgcggtccattcattgactttctcggtt
caagaaggagaatgttttggttttctggggacaaatggagcagggaagaccactactttg
tctatgctatcaggagaagtatatcctagtgatggaactgcattcatttttggtcaagat
atgcgactaaaccccaaagctgctcgccagcatattgggtattgtccacaatttgatgct
ctgctagaatttcttactgtccaagaacatcttgagctctatgcaagaataaaaggcgtc
ccagaatacatgcttgaaaatgttgtaatggataagttagtagagtttgacttgttaaga
catgctactaaacaatcattcaccctaagtgggggcaataaacgcaagttatctgttgca
attgcaatgattggagatcctcctattgtttttatggatgagccatccacaggaatggat
cctattgcaaaacggtttatgtgggaagttatatctcgtctatcaactagaagtggaaag
actgcggtcattctaactactcacagcatgaatgaagctcaagcactttgcacaagaatt
gggataatggttggcggaaagctaaggtgtattggcagtccacagcatctaaaaacacga
tttggaaatcatcttgaattggaggtcaagcctactgaagttagctctgtagacttggaa
aacctttgtcagatgattcaagaaaggctgtttgacatcccttctcatccaaggaccatc
tttggtgaccttgaagtttgtattcgtggcgatgactcaataacacctgaagatgcttca
gtcacagagattagtttgtcaagagagatgataatcttggttggacgctggcttggcaac
gaagaaagaataaagactcttacagatcctgttggctgtggtggggcttttaatgagcaa
ttacctgagcagttggctcgtgatggtggtctcccactaccaatattctcagagtggtgg
ttagcaaaagagaaattctcaatgatagattcgttcgttctatcttcatttcatggggca
acgtctcaaggttccaacgggttgagcgttaaatatcagttgccacgtggagaagacgtc
tcacttgccgatgtttttggtctcatagagcgaaacagaaaccaactagggatagcagag
tatagcatcagccaatcaacccttgaaaccattttcaaccactttgcagccaattcatga
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integrated database retrieval system
