Cynara cardunculus var. scolymus (artichoke): 112517654
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Entry
112517654 CDS
T05604
Name
(RefSeq) amino acid transporter AVT1E-like
KO
K15015
solute carrier family 32 (vesicular inhibitory amino acid transporter)
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
112517654
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112517654
Transporters [BR:
ccav02000
]
Solute carrier family (SLC)
SLC32: Vesicular inhibitory amino acid transporter
112517654
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aa_trans
AgrB
Motif
Other DBs
NCBI-GeneID:
112517654
NCBI-ProteinID:
XP_024980788
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Position
LG_9
Genome browser
AA seq
542 aa
AA seq
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MTGMKIDEEFVPDRRIEVETDDEENEAEIDCDDDDDETGSECGVPYATAQRNSSIITDSQ
SQNHEPWPQTYRQSMDMYTMPLHSMNSFRGASELNLPIKSTFGSTNDQSTLRKRLISATS
LDKDQVPVSTLPIKLSQTSNLRISGLHDLPPPVEQCTFYQSVLNATNVLCGIGILSMPYT
FKEGGWLTLLLLMVFGAITCYTGILLKLCLERFHGLQTYPDIGQAAFGFFGRICIAMVLY
MELFSSCVEYLIMMNDNLSALFPHAHLDIGGIHLDSYQFCAIISTLVILPTVWLRNLSLL
SYISAGGVLTLATVVFCLLWLGVVDRIEYHPSGTALEVGSFPLAVGLVGFCYGGHSVFPN
IYTSMKEPWRFPSALIISFSVSFVLYTAVGVYGYLMFGDSIKSQFTLNMPTNYTTSKVAA
WTVVVAPVTKFALTLTPIAFGIEELLPPSQQNSYVVSIIIRTALTFFILLVALTVPYFGV
VMGLIGSVLVMLVSIIFPCACYLRLLRGRTTTFQITICCLMIFAGLVCAVAGTYSSLASI
PG
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgactgggatgaagatcgatgaagaatttgtacccgataggcgcattgaggttgaaaca
gatgatgaggaaaacgaagcggaaattgattgtgacgacgacgatgatgaaaccggatcc
gagtgtggagtaccttacgccacagctcaaaggaattccagcatcatcaccgattctcaa
tcacaaaaccatgaaccctggcctcaaacttacaggcagtcaatggacatgtacacaatg
ccccttcattctatgaattcttttagaggtgcatcagagttgaatctaccaatcaaatca
acttttggttctacaaatgatcaatccaccttgcgcaagcgcctcatttctgcaacaagc
ttggacaaagatcaagttcctgtttcaacactccctattaagttatctcaaacatcaaac
ttaagaatctctggcctccatgatttaccacctccggtagagcagtgcacattttatcag
tcggtccttaatgcaacaaatgtcctatgcggcatagggatcctatcaatgccttataca
tttaaagaaggaggatggttgacccttttgcttctcatggtttttggtgctattacatgc
tacactggaatattgttgaaattatgtttagaaagatttcatggactccagacgtaccct
gatattggacaagccgcctttggttttttcggccgcatatgtatagctatggttttgtac
atggagttgttttcctcttgtgtggaatacttaataatgatgaatgataacttgtcagca
cttttcccacatgcccacttggatatcggcggcatacatcttgattcgtatcagttctgt
gccattatatccacccttgtgatccttccaacagtttggctgcgaaacctcagcttactc
tcatatatttcagctggaggagttctaacattggcaactgtggtgttctgcttgctatgg
ctaggggtggttgatagaatcgaatatcacccaagtgggactgctttagaggttggaagt
tttcctctagcagttggtcttgttggtttctgctatggcggccattcagtttttccgaat
atctacacttctatgaaagaaccttggagatttccatcagctcttattatcagcttttct
gtatctttcgttttgtatactgcagtaggagtatatggctacttgatgtttggggactcc
attaaatctcaattcactctaaatatgcccacaaattatactacctccaaagttgcagca
tggacagtggttgtggcccctgttacaaagtttgccttaacacttacacccatagcattt
ggtattgaagaactgttgcctccatctcaacaaaattcttatgttgtgtcgataatcata
agaacggcattaacatttttcattctgcttgtagctttaacagttccatattttggagtt
gtgatgggattgattggatccgtactcgtgatgcttgtatctattatatttccttgtgct
tgctacctgcggttactccgtggccgaaccaccacattccagatcacaatttgttgtttg
atgatttttgcgggattagtatgtgccgttgcgggcacatattcgtcgctcgcaagtata
cctggttag
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