Cynara cardunculus var. scolymus (artichoke): 112517720
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Entry
112517720 CDS
T05604
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
ccav04141
Protein processing in endoplasmic reticulum
ccav04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112517720
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112517720
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112517720
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112517720
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112517720
03009 Ribosome biogenesis [BR:
ccav03009
]
112517720
03110 Chaperones and folding catalysts [BR:
ccav03110
]
112517720
04131 Membrane trafficking [BR:
ccav04131
]
112517720
03051 Proteasome [BR:
ccav03051
]
112517720
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112517720
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112517720
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
112517720
Spliceosome [BR:
ccav03041
]
Complex B
Other components
Prp19 complex
112517720
Complex C
Prp19-CDC5 complex
112517720
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
112517720
Chaperones and folding catalysts [BR:
ccav03110
]
Heat shock proteins
HSP70 / DNAK
112517720
Membrane trafficking [BR:
ccav04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
112517720
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
112517720
Proteasome [BR:
ccav03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
112517720
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
112517720
Exosome [BR:
ccav04147
]
Exosomal proteins
Proteins found in most exosomes
112517720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Motif
Other DBs
NCBI-GeneID:
112517720
NCBI-ProteinID:
XP_024980871
LinkDB
All DBs
Position
LG 9:complement(7121716..7123763)
Genome browser
AA seq
613 aa
AA seq
DB search
MAFTVGIDLGTTYSCVAVWRHNGVEIILNEQGNRTTPSCVAFTDFERFIGDAAKNQIAVN
PINTVFDAKRFIGRRYSDETVQADKNLYPFKIVEGLGDKPMISVTYKGEEKRFSAEEISS
MVLSKMKEISSSYLGTTVENAVITVPAYFNDWQRQATKDAGMVAGLNVLRIINEPTAAAI
AYGLVNKDDISTQEINVVIFDLGGGTFDVSLVTISDGVFEVKATAGDSRLGGEDFDNALV
THFVELFKRKHKKDLNQNPKALGRLRIACERAKRILSSTTRTSINIDCLYDAHDFSSVIT
RAKFEEINMNFFKKCVTTAGKCLSDANMDKKNVDKVVLVGGSTRIPKIQQMLQDFFDGVE
LCKSINADEAVAYGAAVLGAKLSGEGDETVLDLQLLDVTPLSLGIQTRGKIMTVLIPRNT
PIPTKIEKVFSTSSDNQTSVLVRVYQGERTRCKDNCLLGQFKLCDIPMAPKFKSLVNVCF
DIDANGILSVSAREMASGQSNKIAIINDRSLSKEEIEKMVKDAEKFRVEDQEHAKKVDAY
IGLQQYAYCMKNKIKGPSVISRLQYQDLKKLESSIDLAIIWLDANPDAEFLELVKLKDLL
ETVFNPFIGQLYE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttacggttggcattgatcttggaactacatactcatgtgttgcagtttggaga
cacaatggcgtagaaatcatactcaacgaacagggaaacagaactacaccttcttgtgtt
gctttcaccgatttcgaacgctttattggtgatgccgccaaaaaccagatagccgtgaat
ccgatcaataccgtttttgatgccaagcggtttattggaaggagatacagtgatgagacg
gtgcaggctgacaagaacttgtatcctttcaagattgtggaaggacttggtgacaagcca
atgatctcggttacatacaaaggggaagaaaagcgtttttcagcagaagaaatttcatct
atggttctttccaagatgaaggagatatcttcgtcttatcttggcacaactgttgaaaat
gcagtaattacagttccagcttattttaatgattggcagcgccaggcaacaaaagatgct
ggcatggttgctgggctaaatgttttacgcattattaatgagcctacagcagctgcaatt
gcatatggtttggtgaacaaagatgatatatcgactcaggagataaatgttgttatcttt
gatttgggtgggggtacatttgatgtgtctcttgtaactatttccgatggtgtatttgag
gtcaaagccacggctggtgacagtcgtttgggtggtgaggacttcgataatgcactagtg
acccactttgttgagttgttcaagaggaaacacaagaaggacttgaatcaaaatcccaag
gcattagggagattgaggattgcttgtgagagagcaaagaggattctttcatcaactact
cggacatctattaatattgattgcttgtatgatgctcatgatttttcgagcgtgatcact
cgggcgaaatttgaagagataaatatgaattttttcaaaaagtgtgtaacaactgcaggt
aagtgtttgagtgatgcaaacatggataagaagaatgtcgataaagtggttcttgttggt
ggctccactaggattcctaaaatacaacaaatgttgcaagatttctttgatggggtcgag
ctatgcaagagcatcaatgcggatgaagctgttgcgtatggtgcagctgttcttggagcc
aagttgagtggcgagggtgacgaaacagtgctagatctgcagttgttggatgtgactcct
ctctcacttggtattcaaacgcgtggtaaaatcatgactgttctgattccaaggaacact
ccaatacccacaaagatagaaaaggttttttcaacctcatccgacaaccaaacttctgtt
ttggttcgagtatatcagggtgagaggacaaggtgtaaggacaactgtttacttggtcag
tttaagctttgtgacataccaatggctccaaagtttaaatccctcgttaatgtttgcttt
gacattgatgccaatggtatcttgagcgtgtcagctcgtgaaatggcaagtggtcagagt
aacaagattgcaatcatcaatgatagaagtttgtcaaaagaggaaattgaaaagatggtg
aaagatgctgagaaatttcgagttgaagaccaagagcatgcaaagaaggtagatgcctac
attggtttgcagcaatatgcttactgcatgaaaaacaaaatcaagggtccatcggtgatt
tctaggctgcagtatcaagacttgaagaaattggagagttcgattgacctggctattatt
tggcttgatgcaaatcctgatgctgagttcctagagcttgtaaagctgaaagatcttttg
gaaactgtattcaaccccttcattggtcagttatatgagtag
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integrated database retrieval system
